Analysis of interatomic Contacts of Structural Units in PDB entry:
8VMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VMK entry

There are 2 chains in PDB entry 8VMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6PRO 308
B
 GLY 6GLY 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8VMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 62Right-handed alpha
Helix 2
AA2
A
75 104Right-handed alpha
Helix 3
AA3
A
108 134Right-handed alpha
Helix 4
AA4
A
137 144Right-handed alpha
Helix 5
AA5
A
144 153Right-handed alpha
Helix 6
AA6
A
157 166Right-handed 310
Helix 7
AA7
A
167 172Right-handed alpha
Helix 8
AA8
A
176 182Right-handed alpha
Helix 9
AA9
A
182 204Right-handed alpha
Helix 10
AB1
A
209 214Right-handed alpha
Helix 11
AB2
A
224 234Right-handed alpha
Helix 12
AB3
A
242 265Right-handed alpha
Helix 13
AB4
A
278 282Right-handed 310
Helix 14
AB5
A
283 292Right-handed alpha
Helix 15
AB6
A
292 306Right-handed alpha
Helix 16
AB7
B
47 63Right-handed alpha
Helix 17
AB8
B
75 104Right-handed alpha
Helix 18
AB9
B
109 134Right-handed alpha
Helix 19
AC1
B
137 144Right-handed alpha
Helix 20
AC2
B
144 153Right-handed alpha
Helix 21
AC3
B
157 166Right-handed 310
Helix 22
AC4
B
167 172Right-handed alpha
Helix 23
AC5
B
176 182Right-handed alpha
Helix 24
AC6
B
182 204Right-handed alpha
Helix 25
AC7
B
209 214Right-handed alpha
Helix 26
AC8
B
224 234Right-handed alpha
Helix 27
AC9
B
242 265Right-handed alpha
Helix 28
AD1
B
273 277Right-handed 310
Helix 29
AD2
B
278 282Right-handed 310
Helix 30
AD3
B
283 292Right-handed alpha
Helix 31
AD4
B
292 306Right-handed alpha
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There are 2 sheets in PDB entry 8VMK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
236 238parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
236 238parallel
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