Analysis of interatomic Contacts of Structural Units in PDB entry:
8VNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VNZ entry

There are 4 chains in PDB entry 8VNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 81	ARG 682
L	TYR 80	ARG 441
N	LYS 4	ASN 410
C	LYS 17	LYS 307

There are 44 helices in PDB entry 8VNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	107	Right-handed alpha
Helix 2	AA2	A	111	115	Right-handed 310
Helix 3	AA3	A	134	146	Right-handed alpha
Helix 4	AA4	A	459	471	Right-handed alpha
Helix 5	AA5	A	502	506	Right-handed 310
Helix 6	AA6	A	539	543	Right-handed 310
Helix 7	AA7	A	577	581	Right-handed 310
Helix 8	AA8	A	589	603	Right-handed alpha
Helix 9	AA9	A	607	625	Right-handed alpha
Helix 10	AB1	A	628	651	Right-handed alpha
Helix 11	AB2	A	652	666	Right-handed alpha
Helix 12	AB3	A	670	680	Right-handed alpha
Helix 13	AB4	L	267	279	Right-handed alpha
Helix 14	AB5	L	395	399	Right-handed 310
Helix 15	AB6	N	5	27	Right-handed alpha
Helix 16	AB7	N	348	350	Right-handed 310
Helix 17	AB8	N	355	362	Right-handed alpha
Helix 18	AB9	N	406	409	Right-handed 310
Helix 19	AC1	C	18	34	Right-handed alpha
Helix 20	AC2	C	34	63	Right-handed alpha
Helix 21	AC3	C	74	79	Right-handed 310
Helix 22	AC4	C	137	142	Right-handed alpha
Helix 23	AC5	C	143	154	Right-handed alpha
Helix 24	AC6	C	167	176	Right-handed alpha
Helix 25	AC7	C	221	231	Right-handed alpha
Helix 26	AC8	C	238	250	Right-handed alpha
Helix 27	AC9	C	273	284	Right-handed alpha
Helix 28	AD1	C	309	313	Right-handed 310
Helix 29	AD2	C	328	339	Right-handed alpha
Helix 30	AD3	C	433	444	Right-handed alpha
Helix 31	AD4	C	450	458	Right-handed alpha
Helix 32	AD5	C	462	477	Right-handed alpha
Helix 33	AD6	C	494	513	Right-handed alpha
Helix 34	AD7	C	534	539	Right-handed alpha
Helix 35	AD8	C	571	576	Right-handed alpha
Helix 36	AD9	C	604	609	Right-handed alpha
Helix 37	AE1	C	648	662	Right-handed alpha
Helix 38	AE2	C	682	687	Right-handed 310
Helix 39	AE3	C	729	737	Right-handed alpha
Helix 40	AE4	B	143	147	Right-handed 310
Helix 41	AE5	B	160	165	Right-handed alpha
Helix 42	AE6	P	191	209	Right-handed alpha
Helix 43	AE7	P	255	259	Right-handed 310
Helix 44	AE8	P	276	281	Right-handed 310

There are 25 sheets in PDB entry 8VNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	157	165	anti-parallel
Strand 3	A	354	361	anti-parallel
Strand 4	A	314	317	anti-parallel
Strand 5	P	229	231	anti-parallel
Strand 6	P	237	241	anti-parallel
Strand 7	P	252	254	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	207	first strand
Strand 2	A	183	191	anti-parallel
Strand 3	A	211	212	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	207	first strand
Strand 2	A	183	191	anti-parallel
Strand 3	A	249	253	anti-parallel
Strand 4	A	297	300	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	433	first strand
Strand 2	A	484	491	parallel
Strand 3	A	474	481	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	560	first strand
Strand 2	A	525	530	anti-parallel
Strand 3	N	32	39	anti-parallel
Strand 4	N	398	404	anti-parallel
Strand 5	N	390	394	anti-parallel
Strand 6	N	377	382	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	82	83	first strand
Strand 2	L	435	439	anti-parallel
Strand 3	L	424	427	anti-parallel
Strand 4	L	416	418	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	90	first strand
Strand 2	C	82	86	anti-parallel
Strand 3	C	94	97	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	101	first strand
Strand 2	L	111	115	anti-parallel
Strand 3	L	120	126	anti-parallel
Strand 4	L	132	134	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	101	first strand
Strand 2	L	111	115	anti-parallel
Strand 3	L	120	126	anti-parallel
Strand 4	L	138	139	anti-parallel
Strand 5	C	99	100	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	154	first strand
Strand 2	L	161	167	anti-parallel
Strand 3	L	171	176	anti-parallel
Strand 4	L	181	187	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	196	198	first strand
Strand 2	L	205	208	anti-parallel
Strand 3	L	216	219	anti-parallel
Strand 4	L	224	228	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	239	244	first strand
Strand 2	L	250	255	anti-parallel
Strand 3	L	260	264	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	309	315	first strand
Strand 2	L	318	323	anti-parallel
Strand 3	L	327	333	anti-parallel
Strand 4	L	350	357	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	368	370	first strand
Strand 2	L	376	379	anti-parallel
Strand 3	L	386	390	anti-parallel
Strand 4	L	402	404	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	48	49	first strand
Strand 2	N	62	69	anti-parallel
Strand 3	N	78	86	anti-parallel
Strand 4	N	115	122	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	131	132	first strand
Strand 2	N	139	141	anti-parallel
Strand 3	N	149	153	anti-parallel
Strand 4	N	171	173	anti-parallel
Strand 5	N	216	217	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	183	185	first strand
Strand 2	N	192	195	anti-parallel
Strand 3	N	202	206	anti-parallel
Strand 4	N	221	223	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	230	236	first strand
Strand 2	N	239	247	anti-parallel
Strand 3	N	252	256	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	276	281	first strand
Strand 2	N	288	293	anti-parallel
Strand 3	N	298	302	anti-parallel
Strand 4	N	311	313	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	320	325	first strand
Strand 2	N	332	337	anti-parallel
Strand 3	N	342	346	anti-parallel
Strand 4	N	366	370	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	115	first strand
Strand 2	C	680	681	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	614	618	first strand
Strand 2	C	624	628	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	637	638	first strand
Strand 2	C	705	712	anti-parallel
Strand 3	C	695	702	anti-parallel
Strand 4	C	724	725	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	644	647	first strand
Strand 2	C	673	676	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	219	223	first strand
Strand 2	P	264	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VNZ