Analysis of interatomic Contacts of Structural Units in PDB entry:
8VO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VO5 entry

There are 7 chains in PDB entry 8VO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	TYR 493
B	ASP 3	GLU 72
B	GLY 74	PHE 375
C	ASP 3	GLU 72
C	GLY 74	PHE 375
D	ASP 3	GLU 72
D	GLY 74	PHE 375

There are 68 helices in PDB entry 8VO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	89	Right-handed 310
Helix 2	AA2	A	127	131	Right-handed 310
Helix 3	AA3	A	172	176	Right-handed 310
Helix 4	AA4	A	331	335	Right-handed 310
Helix 5	AA5	A	473	477	Right-handed 310
Helix 6	AA6	A	486	490	Right-handed 310
Helix 7	AA7	B	55	61	Right-handed alpha
Helix 8	AA8	B	78	92	Right-handed alpha
Helix 9	AA9	B	97	101	Right-handed 310
Helix 10	AB1	B	112	126	Right-handed alpha
Helix 11	AB2	B	137	146	Right-handed alpha
Helix 12	AB3	B	172	175	Right-handed 310
Helix 13	AB4	B	181	193	Right-handed alpha
Helix 14	AB5	B	194	197	Right-handed 310
Helix 15	AB6	B	202	217	Right-handed alpha
Helix 16	AB7	B	222	231	Right-handed alpha
Helix 17	AB8	B	252	257	Right-handed alpha
Helix 18	AB9	B	258	262	Right-handed 310
Helix 19	AC1	B	263	268	Right-handed 310
Helix 20	AC2	B	273	284	Right-handed alpha
Helix 21	AC3	B	286	296	Right-handed alpha
Helix 22	AC4	B	308	321	Right-handed alpha
Helix 23	AC5	B	334	336	Right-handed 310
Helix 24	AC6	B	337	348	Right-handed alpha
Helix 25	AC7	B	352	356	Right-handed 310
Helix 26	AC8	B	359	364	Right-handed alpha
Helix 27	AC9	B	366	368	Right-handed 310
Helix 28	AD1	B	369	374	Right-handed alpha
Helix 29	AD2	C	55	61	Right-handed alpha
Helix 30	AD3	C	78	92	Right-handed alpha
Helix 31	AD4	C	112	126	Right-handed alpha
Helix 32	AD5	C	137	146	Right-handed alpha
Helix 33	AD6	C	172	175	Right-handed 310
Helix 34	AD7	C	181	194	Right-handed alpha
Helix 35	AD8	C	195	197	Right-handed 310
Helix 36	AD9	C	202	217	Right-handed alpha
Helix 37	AE1	C	222	231	Right-handed alpha
Helix 38	AE2	C	252	257	Right-handed alpha
Helix 39	AE3	C	258	262	Right-handed 310
Helix 40	AE4	C	263	268	Right-handed 310
Helix 41	AE5	C	273	284	Right-handed alpha
Helix 42	AE6	C	286	296	Right-handed alpha
Helix 43	AE7	C	301	305	Right-handed 310
Helix 44	AE8	C	308	321	Right-handed alpha
Helix 45	AE9	C	337	349	Right-handed alpha
Helix 46	AF1	C	359	366	Right-handed alpha
Helix 47	AF2	C	369	374	Right-handed alpha
Helix 48	AF3	D	55	61	Right-handed alpha
Helix 49	AF4	D	78	92	Right-handed alpha
Helix 50	AF5	D	97	101	Right-handed 310
Helix 51	AF6	D	112	126	Right-handed alpha
Helix 52	AF7	D	137	146	Right-handed alpha
Helix 53	AF8	D	172	175	Right-handed 310
Helix 54	AF9	D	181	194	Right-handed alpha
Helix 55	AG1	D	195	197	Right-handed 310
Helix 56	AG2	D	202	217	Right-handed alpha
Helix 57	AG3	D	222	231	Right-handed alpha
Helix 58	AG4	D	252	257	Right-handed alpha
Helix 59	AG5	D	258	262	Right-handed 310
Helix 60	AG6	D	273	284	Right-handed alpha
Helix 61	AG7	D	286	296	Right-handed alpha
Helix 62	AG8	D	302	306	Right-handed 310
Helix 63	AG9	D	308	321	Right-handed alpha
Helix 64	AH1	D	334	336	Right-handed 310
Helix 65	AH2	D	337	349	Right-handed alpha
Helix 66	AH3	D	352	356	Right-handed 310
Helix 67	AH4	D	359	366	Right-handed alpha
Helix 68	AH5	D	369	374	Right-handed alpha

There are 37 sheets in PDB entry 8VO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	46	49	anti-parallel
Strand 3	A	13	17	anti-parallel
Strand 4	A	133	136	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	33	37	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	78	79	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	95	first strand
Strand 2	A	101	105	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	120	123	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	177	182	anti-parallel
Strand 3	A	141	146	anti-parallel
Strand 4	A	254	258	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	154	first strand
Strand 2	A	164	167	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	202	203	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	220	224	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	234	first strand
Strand 2	A	239	242	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	294	298	anti-parallel
Strand 3	A	261	266	anti-parallel
Strand 4	A	377	380	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	282	285	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	323	324	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	354	357	anti-parallel
Strand 4	A	363	367	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	422	426	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	404	408	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	441	442	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	457	first strand
Strand 2	A	460	465	anti-parallel
Strand 3	A	468	471	anti-parallel
Strand 4	A	479	482	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	103	107	parallel
Strand 3	B	131	136	parallel
Strand 4	B	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	16	19	anti-parallel
Strand 3	B	29	32	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	C	169	170	anti-parallel
Strand 3	C	160	166	anti-parallel
Strand 4	C	176	178	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	C	169	170	anti-parallel
Strand 3	C	160	166	anti-parallel
Strand 4	C	150	155	anti-parallel
Strand 5	C	297	300	parallel
Strand 6	C	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	19	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VO5