Analysis of interatomic Contacts of Structural Units in PDB entry:
8VOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VOH entry

There are 2 chains in PDB entry 8VOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 131THR 324
B
 GLY 1ASN 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8VOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 164Right-handed alpha
Helix 2
AA2
A
185 192Right-handed alpha
Helix 3
AA3
A
194 200Right-handed alpha
Helix 4
AA4
A
210 221Right-handed alpha
Helix 5
AA5
A
224 228Right-handed 310
Helix 6
AA6
A
255 262Right-handed alpha
Helix 7
AA7
A
273 276Right-handed 310
Helix 8
AA8
A
277 288Right-handed alpha
Helix 9
AA9
A
291 295Right-handed alpha
Helix 10
AB1
A
304 318Right-handed alpha
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There are 2 sheets in PDB entry 8VOH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
133 140parallel
Strand 4
A
234 241parallel
Strand 5
A
265 271parallel
Strand 6
A
296 299parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
32 39anti-parallel
Strand 3
B
47 54anti-parallel
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