Analysis of interatomic Contacts of Structural Units in PDB entry:
8VOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VOX entry

There are 2 chains in PDB entry 8VOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 153GLU 722
B
 ASN 153GLU 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8VOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 162Right-handed alpha
Helix 2
AA2
A
165 196Right-handed alpha
Helix 3
AA3
A
196 201Right-handed alpha
Helix 4
AA4
A
203 252Right-handed alpha
Helix 5
AA5
A
254 261Right-handed alpha
Helix 6
AA6
A
262 273Right-handed alpha
Helix 7
AA7
A
273 281Right-handed alpha
Helix 8
AA8
A
282 305Right-handed alpha
Helix 9
AA9
A
306 354Right-handed alpha
Helix 10
AB1
A
354 362Right-handed alpha
Helix 11
AB2
A
363 418Right-handed alpha
Helix 12
AB3
A
421 432Right-handed alpha
Helix 13
AB4
A
433 435Right-handed 310
Helix 14
AB5
A
436 445Right-handed alpha
Helix 15
AB6
A
448 464Right-handed alpha
Helix 16
AB7
A
467 472Right-handed alpha
Helix 17
AB8
A
524 533Right-handed alpha
Helix 18
AB9
A
551 553Right-handed 310
Helix 19
AC1
A
554 561Right-handed alpha
Helix 20
AC2
A
576 581Right-handed alpha
Helix 21
AC3
A
589 599Right-handed alpha
Helix 22
AC4
A
601 607Right-handed alpha
Helix 23
AC5
A
624 639Right-handed alpha
Helix 24
AC6
A
654 667Right-handed alpha
Helix 25
AC7
A
703 711Right-handed alpha
Helix 26
AC8
A
712 722Right-handed alpha
Helix 27
AC9
B
154 163Right-handed alpha
Helix 28
AD1
B
166 188Right-handed alpha
Helix 29
AD2
B
188 196Right-handed alpha
Helix 30
AD3
B
196 201Right-handed alpha
Helix 31
AD4
B
203 251Right-handed alpha
Helix 32
AD5
B
254 261Right-handed alpha
Helix 33
AD6
B
262 272Right-handed alpha
Helix 34
AD7
B
272 281Right-handed alpha
Helix 35
AD8
B
281 305Right-handed alpha
Helix 36
AD9
B
305 354Right-handed alpha
Helix 37
AE1
B
354 362Right-handed alpha
Helix 38
AE2
B
363 417Right-handed alpha
Helix 39
AE3
B
420 432Right-handed alpha
Helix 40
AE4
B
433 435Right-handed 310
Helix 41
AE5
B
436 445Right-handed alpha
Helix 42
AE6
B
445 465Right-handed alpha
Helix 43
AE7
B
467 472Right-handed alpha
Helix 44
AE8
B
524 534Right-handed alpha
Helix 45
AE9
B
551 553Right-handed 310
Helix 46
AF1
B
554 561Right-handed alpha
Helix 47
AF2
B
576 581Right-handed alpha
Helix 48
AF3
B
588 599Right-handed alpha
Helix 49
AF4
B
601 608Right-handed alpha
Helix 50
AF5
B
624 639Right-handed alpha
Helix 51
AF6
B
654 666Right-handed alpha
Helix 52
AF7
B
680 685Right-handed 310
Helix 53
AF8
B
703 710Right-handed alpha
Helix 54
AF9
B
712 722Right-handed alpha
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There are 6 sheets in PDB entry 8VOX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 509first strand
Strand 2
A
486 494anti-parallel
Strand 3
A
540 545anti-parallel
Strand 4
A
548 549anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
643 647parallel
Strand 3
A
673 677parallel
Strand 4
A
514 519parallel
Strand 5
A
689 694parallel
Strand 6
A
697 702anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 575first strand
Strand 2
A
615 616anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 509first strand
Strand 2
B
486 493anti-parallel
Strand 3
B
540 545anti-parallel
Strand 4
B
548 549anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 565first strand
Strand 2
B
643 647parallel
Strand 3
B
673 677parallel
Strand 4
B
514 519parallel
Strand 5
B
689 693parallel
Strand 6
B
698 702anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 575first strand
Strand 2
B
615 616anti-parallel
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