Analysis of interatomic Contacts of Structural Units in PDB entry:
8VP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VP4 entry

There are 4 chains in PDB entry 8VP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 357GLN 1332
B
 MET 356GLN 1332
D
 VAL 2ALA 5
C
 VAL 2ALA 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8VP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
385 398Right-handed alpha
Helix 2
AA2
A
402 417Right-handed alpha
Helix 3
AA3
A
1187 1191Right-handed 310
Helix 4
AA4
A
1221 1236Right-handed alpha
Helix 5
AA5
A
1247 1260Right-handed alpha
Helix 6
AA6
A
1261 1267Right-handed 310
Helix 7
AA7
A
1293 1300Right-handed alpha
Helix 8
AA8
A
1305 1309Right-handed 310
Helix 9
AA9
B
385 398Right-handed alpha
Helix 10
AB1
B
402 417Right-handed alpha
Helix 11
AB2
B
1221 1236Right-handed alpha
Helix 12
AB3
B
1247 1260Right-handed alpha
Helix 13
AB4
B
1261 1266Right-handed 310
Helix 14
AB5
B
1293 1300Right-handed alpha
Helix 15
AB6
B
1305 1309Right-handed 310
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There are 6 sheets in PDB entry 8VP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1238 1244first strand
Strand 2
A
1200 1206parallel
Strand 3
A
1269 1275parallel
Strand 4
A
1313 1318parallel
Strand 5
A
364 368parallel
Strand 6
A
434 437anti-parallel
Strand 7
B
434 437anti-parallel
Strand 8
B
364 368anti-parallel
Strand 9
B
1313 1318parallel
Strand 10
B
1269 1275parallel
Strand 11
B
1200 1206parallel
Strand 12
B
1238 1244parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
377 379anti-parallel
Strand 3
C
3 5anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1278 1279first strand
Strand 2
A
1282 1284anti-parallel
Strand 3
A
1290 1292anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1329 1330first strand
Strand 2
B
357 358anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 384first strand
Strand 2
B
377 379anti-parallel
Strand 3
D
3 5anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1278 1279first strand
Strand 2
B
1282 1284anti-parallel
Strand 3
B
1290 1292anti-parallel
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