Analysis of interatomic Contacts of Structural Units in PDB entry:
8VP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VP6 entry

There are 2 chains in PDB entry 8VP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ILE 677
B
 LYS 9ALA 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8VP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 33Right-handed alpha
Helix 2
AA2
A
38 46Right-handed alpha
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
124 130Right-handed alpha
Helix 5
AA5
A
153 160Right-handed alpha
Helix 6
AA6
A
161 163Right-handed 310
Helix 7
AA7
A
166 187Right-handed alpha
Helix 8
AA8
A
188 196Right-handed alpha
Helix 9
AA9
A
196 201Right-handed alpha
Helix 10
AB1
A
202 251Right-handed alpha
Helix 11
AB2
A
254 260Right-handed alpha
Helix 12
AB3
A
263 305Right-handed alpha
Helix 13
AB4
A
305 354Right-handed alpha
Helix 14
AB5
A
354 362Right-handed alpha
Helix 15
AB6
A
363 418Right-handed alpha
Helix 16
AB7
A
421 444Right-handed alpha
Helix 17
AB8
A
445 464Right-handed alpha
Helix 18
AB9
A
524 533Right-handed alpha
Helix 19
AC1
A
554 561Right-handed alpha
Helix 20
AC2
A
588 599Right-handed alpha
Helix 21
AC3
A
627 639Right-handed alpha
Helix 22
AC4
B
21 33Right-handed alpha
Helix 23
AC5
B
38 46Right-handed alpha
Helix 24
AC6
B
54 65Right-handed alpha
Helix 25
AC7
B
75 81Right-handed alpha
Helix 26
AC8
B
125 131Right-handed alpha
Helix 27
AC9
B
153 160Right-handed alpha
Helix 28
AD1
B
161 163Right-handed 310
Helix 29
AD2
B
165 187Right-handed alpha
Helix 30
AD3
B
188 196Right-handed alpha
Helix 31
AD4
B
196 201Right-handed alpha
Helix 32
AD5
B
203 252Right-handed alpha
Helix 33
AD6
B
254 260Right-handed alpha
Helix 34
AD7
B
262 305Right-handed alpha
Helix 35
AD8
B
305 354Right-handed alpha
Helix 36
AD9
B
354 362Right-handed alpha
Helix 37
AE1
B
363 418Right-handed alpha
Helix 38
AE2
B
421 464Right-handed alpha
Helix 39
AE3
B
467 472Right-handed alpha
Helix 40
AE4
B
523 531Right-handed alpha
Helix 41
AE5
B
554 561Right-handed alpha
Helix 42
AE6
B
575 581Right-handed alpha
Helix 43
AE7
B
588 599Right-handed alpha
Helix 44
AE8
B
601 606Right-handed alpha
Helix 45
AE9
B
628 639Right-handed alpha
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There are 8 sheets in PDB entry 8VP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
148 149parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
110 115anti-parallel
Strand 3
A
100 107anti-parallel
Strand 4
A
87 91anti-parallel
Strand 5
A
132 138anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 509first strand
Strand 2
A
486 493anti-parallel
Strand 3
A
542 545anti-parallel
Strand 4
A
548 549anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 516first strand
Strand 2
A
673 676parallel
Strand 3
A
643 646parallel
Strand 4
A
562 565parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
148 150parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
132 137anti-parallel
Strand 3
B
87 91anti-parallel
Strand 4
B
101 105anti-parallel
Strand 5
B
110 115anti-parallel
Strand 6
B
119 124anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 509first strand
Strand 2
B
486 493anti-parallel
Strand 3
B
540 545anti-parallel
Strand 4
B
548 549anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 565first strand
Strand 2
B
643 646parallel
Strand 3
B
674 676parallel
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