Analysis of interatomic Contacts of Structural Units in PDB entry:
8VP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VP8 entry

There are 2 chains in PDB entry 8VP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 155GLU 722
B
 MET 155GLU 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8VP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
159 164Right-handed 310
Helix 2
AA2
A
165 187Right-handed alpha
Helix 3
AA3
A
188 196Right-handed alpha
Helix 4
AA4
A
205 252Right-handed alpha
Helix 5
AA5
A
254 260Right-handed alpha
Helix 6
AA6
A
262 272Right-handed alpha
Helix 7
AA7
A
273 278Right-handed alpha
Helix 8
AA8
A
281 304Right-handed alpha
Helix 9
AA9
A
306 326Right-handed alpha
Helix 10
AB1
A
327 354Right-handed alpha
Helix 11
AB2
A
355 362Right-handed alpha
Helix 12
AB3
A
363 416Right-handed alpha
Helix 13
AB4
A
421 445Right-handed alpha
Helix 14
AB5
A
445 462Right-handed alpha
Helix 15
AB6
A
524 533Right-handed alpha
Helix 16
AB7
A
551 553Right-handed 310
Helix 17
AB8
A
554 561Right-handed alpha
Helix 18
AB9
A
575 581Right-handed alpha
Helix 19
AC1
A
588 599Right-handed alpha
Helix 20
AC2
A
601 608Right-handed alpha
Helix 21
AC3
A
625 639Right-handed alpha
Helix 22
AC4
A
703 709Right-handed alpha
Helix 23
AC5
A
712 722Right-handed alpha
Helix 24
AC6
B
158 163Right-handed alpha
Helix 25
AC7
B
166 187Right-handed alpha
Helix 26
AC8
B
188 195Right-handed alpha
Helix 27
AC9
B
204 252Right-handed alpha
Helix 28
AD1
B
254 260Right-handed alpha
Helix 29
AD2
B
262 280Right-handed alpha
Helix 30
AD3
B
284 305Right-handed alpha
Helix 31
AD4
B
305 354Right-handed alpha
Helix 32
AD5
B
356 362Right-handed alpha
Helix 33
AD6
B
365 417Right-handed alpha
Helix 34
AD7
B
422 433Right-handed alpha
Helix 35
AD8
B
436 464Right-handed alpha
Helix 36
AD9
B
524 534Right-handed alpha
Helix 37
AE1
B
554 562Right-handed alpha
Helix 38
AE2
B
575 581Right-handed alpha
Helix 39
AE3
B
588 599Right-handed alpha
Helix 40
AE4
B
601 607Right-handed alpha
Helix 41
AE5
B
610 614Right-handed 310
Helix 42
AE6
B
617 621Right-handed 310
Helix 43
AE7
B
624 639Right-handed alpha
Helix 44
AE8
B
682 687Right-handed 310
Helix 45
AE9
B
703 709Right-handed alpha
Helix 46
AF1
B
712 722Right-handed alpha
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There are 5 sheets in PDB entry 8VP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 564first strand
Strand 2
A
643 645parallel
Strand 3
A
673 677parallel
Strand 4
A
516 519parallel
Strand 5
A
690 693parallel
Strand 6
A
698 702anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
548 549anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 493first strand
Strand 2
B
502 505anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
645 646first strand
Strand 2
B
675 677parallel
Strand 3
B
516 519parallel
Strand 4
B
690 693parallel
Strand 5
B
698 702anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 545first strand
Strand 2
B
548 549anti-parallel
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