Analysis of interatomic Contacts of Structural Units in PDB entry:
8VPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VPA entry

There are 2 chains in PDB entry 8VPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 153GLU 722
B
 ASN 153GLU 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8VPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 163Right-handed alpha
Helix 2
AA2
A
167 193Right-handed alpha
Helix 3
AA3
A
196 201Right-handed alpha
Helix 4
AA4
A
204 251Right-handed alpha
Helix 5
AA5
A
254 261Right-handed alpha
Helix 6
AA6
A
262 272Right-handed alpha
Helix 7
AA7
A
272 280Right-handed alpha
Helix 8
AA8
A
284 305Right-handed alpha
Helix 9
AA9
A
305 354Right-handed alpha
Helix 10
AB1
A
354 362Right-handed alpha
Helix 11
AB2
A
363 417Right-handed alpha
Helix 12
AB3
A
421 432Right-handed alpha
Helix 13
AB4
A
433 435Right-handed 310
Helix 14
AB5
A
436 445Right-handed alpha
Helix 15
AB6
A
445 464Right-handed alpha
Helix 16
AB7
A
468 472Right-handed 310
Helix 17
AB8
A
524 533Right-handed alpha
Helix 18
AB9
A
549 553Right-handed 310
Helix 19
AC1
A
554 561Right-handed alpha
Helix 20
AC2
A
576 581Right-handed alpha
Helix 21
AC3
A
588 599Right-handed alpha
Helix 22
AC4
A
601 607Right-handed alpha
Helix 23
AC5
A
617 621Right-handed 310
Helix 24
AC6
A
624 638Right-handed alpha
Helix 25
AC7
A
680 684Right-handed 310
Helix 26
AC8
A
703 711Right-handed alpha
Helix 27
AC9
A
712 721Right-handed alpha
Helix 28
AD1
B
154 162Right-handed alpha
Helix 29
AD2
B
166 187Right-handed alpha
Helix 30
AD3
B
188 196Right-handed alpha
Helix 31
AD4
B
196 201Right-handed alpha
Helix 32
AD5
B
202 251Right-handed alpha
Helix 33
AD6
B
254 261Right-handed alpha
Helix 34
AD7
B
262 272Right-handed alpha
Helix 35
AD8
B
272 280Right-handed alpha
Helix 36
AD9
B
284 305Right-handed alpha
Helix 37
AE1
B
305 354Right-handed alpha
Helix 38
AE2
B
354 362Right-handed alpha
Helix 39
AE3
B
363 418Right-handed alpha
Helix 40
AE4
B
421 432Right-handed alpha
Helix 41
AE5
B
435 445Right-handed alpha
Helix 42
AE6
B
445 464Right-handed alpha
Helix 43
AE7
B
524 533Right-handed alpha
Helix 44
AE8
B
551 553Right-handed 310
Helix 45
AE9
B
554 561Right-handed alpha
Helix 46
AF1
B
576 581Right-handed alpha
Helix 47
AF2
B
590 599Right-handed alpha
Helix 48
AF3
B
601 607Right-handed alpha
Helix 49
AF4
B
617 621Right-handed 310
Helix 50
AF5
B
624 638Right-handed alpha
Helix 51
AF6
B
703 710Right-handed alpha
Helix 52
AF7
B
712 722Right-handed alpha
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There are 6 sheets in PDB entry 8VPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 509first strand
Strand 2
A
486 493anti-parallel
Strand 3
A
542 544anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
643 647parallel
Strand 3
A
673 677parallel
Strand 4
A
514 518parallel
Strand 5
A
689 694parallel
Strand 6
A
697 702anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 575first strand
Strand 2
A
615 616anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 509first strand
Strand 2
B
486 493anti-parallel
Strand 3
B
540 545anti-parallel
Strand 4
B
548 549anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 565first strand
Strand 2
B
643 646parallel
Strand 3
B
673 677parallel
Strand 4
B
514 518parallel
Strand 5
B
689 694parallel
Strand 6
B
697 702anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 575first strand
Strand 2
B
615 616anti-parallel
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