Analysis of interatomic Contacts of Structural Units in PDB entry:
8VPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VPB entry

There are 2 chains in PDB entry 8VPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11GLU 722
B
 VAL 11GLU 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8VPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 33Right-handed alpha
Helix 2
AA2
A
38 47Right-handed alpha
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
75 81Right-handed alpha
Helix 5
AA5
A
124 131Right-handed alpha
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
161 163Right-handed 310
Helix 8
AA8
A
166 187Right-handed alpha
Helix 9
AA9
A
188 196Right-handed alpha
Helix 10
AB1
A
196 201Right-handed alpha
Helix 11
AB2
A
203 251Right-handed alpha
Helix 12
AB3
A
254 259Right-handed alpha
Helix 13
AB4
A
262 305Right-handed alpha
Helix 14
AB5
A
305 353Right-handed alpha
Helix 15
AB6
A
354 360Right-handed alpha
Helix 16
AB7
A
363 417Right-handed alpha
Helix 17
AB8
A
422 443Right-handed alpha
Helix 18
AB9
A
445 464Right-handed alpha
Helix 19
AC1
A
467 472Right-handed alpha
Helix 20
AC2
A
524 533Right-handed alpha
Helix 21
AC3
A
551 553Right-handed 310
Helix 22
AC4
A
554 561Right-handed alpha
Helix 23
AC5
A
575 581Right-handed alpha
Helix 24
AC6
A
588 599Right-handed alpha
Helix 25
AC7
A
601 608Right-handed alpha
Helix 26
AC8
A
626 639Right-handed alpha
Helix 27
AC9
A
654 667Right-handed alpha
Helix 28
AD1
A
680 684Right-handed 310
Helix 29
AD2
A
703 710Right-handed alpha
Helix 30
AD3
A
712 722Right-handed alpha
Helix 31
AD4
B
20 33Right-handed alpha
Helix 32
AD5
B
38 46Right-handed alpha
Helix 33
AD6
B
55 66Right-handed alpha
Helix 34
AD7
B
75 82Right-handed alpha
Helix 35
AD8
B
124 131Right-handed alpha
Helix 36
AD9
B
153 160Right-handed alpha
Helix 37
AE1
B
161 163Right-handed 310
Helix 38
AE2
B
167 188Right-handed alpha
Helix 39
AE3
B
188 196Right-handed alpha
Helix 40
AE4
B
196 201Right-handed alpha
Helix 41
AE5
B
203 251Right-handed alpha
Helix 42
AE6
B
254 259Right-handed alpha
Helix 43
AE7
B
262 305Right-handed alpha
Helix 44
AE8
B
305 354Right-handed alpha
Helix 45
AE9
B
354 360Right-handed alpha
Helix 46
AF1
B
363 417Right-handed alpha
Helix 47
AF2
B
422 444Right-handed alpha
Helix 48
AF3
B
445 464Right-handed alpha
Helix 49
AF4
B
467 472Right-handed alpha
Helix 50
AF5
B
525 533Right-handed alpha
Helix 51
AF6
B
551 553Right-handed 310
Helix 52
AF7
B
554 561Right-handed alpha
Helix 53
AF8
B
575 581Right-handed alpha
Helix 54
AF9
B
588 599Right-handed alpha
Helix 55
AG1
B
601 608Right-handed alpha
Helix 56
AG2
B
626 639Right-handed alpha
Helix 57
AG3
B
649 653Right-handed 310
Helix 58
AG4
B
654 667Right-handed alpha
Helix 59
AG5
B
703 710Right-handed alpha
Helix 60
AG6
B
712 722Right-handed alpha
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There are 9 sheets in PDB entry 8VPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
148 150parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
87 91anti-parallel
Strand 4
A
99 107anti-parallel
Strand 5
A
110 115anti-parallel
Strand 6
A
119 123anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
486 488anti-parallel
Strand 3
A
543 545anti-parallel
Strand 4
A
548 549anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 494first strand
Strand 2
A
500 502anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
643 647parallel
Strand 3
A
673 678parallel
Strand 4
A
515 519parallel
Strand 5
A
689 693parallel
Strand 6
A
698 702anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
148 150parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
132 138anti-parallel
Strand 3
B
87 91anti-parallel
Strand 4
B
100 107anti-parallel
Strand 5
B
110 115anti-parallel
Strand 6
B
119 123anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 509first strand
Strand 2
B
486 494anti-parallel
Strand 3
B
543 545anti-parallel
Strand 4
B
548 549anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 565first strand
Strand 2
B
643 647parallel
Strand 3
B
673 678parallel
Strand 4
B
515 518parallel
Strand 5
B
689 693parallel
Strand 6
B
698 702anti-parallel
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