Analysis of interatomic Contacts of Structural Units in PDB entry:
8VPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VPC entry

There are 28 chains in PDB entry 8VPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 2
A
 ALA 4ALA 4
A
 LEU 6LEU 6
A
 ALA 8ALA 8
A
 LEU 10LEU 10
A
 GLN 12GLN 12
A
 LEU 14LEU 14
B
 ALA 2ALA 2
B
 ALA 4ALA 4
B
 LEU 6LEU 6
B
 ALA 8ALA 8
B
 LEU 10LEU 10
B
 GLN 12GLN 12
B
 LEU 14LEU 14
C
 ALA 2ALA 2
C
 ALA 4ALA 4
C
 LEU 6LEU 6
C
 ALA 8ALA 8
C
 LEU 10LEU 10
C
 GLN 12GLN 12
C
 LEU 14LEU 14
D
 ALA 2ALA 2
D
 ALA 4ALA 4
D
 LEU 6LEU 6
D
 ALA 8ALA 8
D
 LEU 10LEU 10
D
 GLN 12GLN 12
D
 LEU 14LEU 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8VPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
B
3 14Right-handed alpha
Helix 3
AA3
C
3 14Right-handed alpha
Helix 4
AA4
D
3 14Right-handed alpha
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There are no sheets in PDB entry 8VPC
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il