Analysis of interatomic Contacts of Structural Units in PDB entry:
8VPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VPF entry

There are 9 chains in PDB entry 8VPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 30	PRO 1125
M	VAL 2	SER 127
N	LEU 4	VAL 110
B	TYR 30	PRO 1125
D	VAL 2	SER 127
F	LEU 4	VAL 110
C	TYR 30	PRO 1125
E	VAL 2	SER 127
G	LEU 4	VAL 110

There are 57 helices in PDB entry 8VPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	281	290	Right-handed alpha
Helix 2	AA2	A	602	612	Right-handed alpha
Helix 3	AA3	A	719	725	Right-handed alpha
Helix 4	AA4	A	728	735	Right-handed alpha
Helix 5	AA5	A	736	739	Right-handed 310
Helix 6	AA6	A	740	765	Right-handed alpha
Helix 7	AA7	A	798	805	Right-handed alpha
Helix 8	AA8	A	848	866	Right-handed alpha
Helix 9	AA9	A	867	872	Right-handed 310
Helix 10	AB1	A	879	889	Right-handed alpha
Helix 11	AB2	A	894	901	Right-handed alpha
Helix 12	AB3	A	901	923	Right-handed alpha
Helix 13	AB4	A	927	947	Right-handed alpha
Helix 14	AB5	A	948	950	Right-handed 310
Helix 15	AB6	A	958	966	Right-handed alpha
Helix 16	AB7	A	967	1015	Right-handed alpha
Helix 17	AB8	M	62	65	Right-handed 310
Helix 18	AB9	M	87	91	Right-handed 310
Helix 19	AC1	N	81	85	Right-handed 310
Helix 20	AC2	B	281	290	Right-handed alpha
Helix 21	AC3	B	602	612	Right-handed alpha
Helix 22	AC4	B	719	725	Right-handed alpha
Helix 23	AC5	B	728	735	Right-handed alpha
Helix 24	AC6	B	736	739	Right-handed 310
Helix 25	AC7	B	740	765	Right-handed alpha
Helix 26	AC8	B	798	805	Right-handed alpha
Helix 27	AC9	B	848	866	Right-handed alpha
Helix 28	AD1	B	867	872	Right-handed 310
Helix 29	AD2	B	879	889	Right-handed alpha
Helix 30	AD3	B	894	901	Right-handed alpha
Helix 31	AD4	B	901	923	Right-handed alpha
Helix 32	AD5	B	927	947	Right-handed alpha
Helix 33	AD6	B	948	950	Right-handed 310
Helix 34	AD7	B	958	966	Right-handed alpha
Helix 35	AD8	B	967	1015	Right-handed alpha
Helix 36	AD9	D	62	65	Right-handed 310
Helix 37	AE1	D	87	91	Right-handed 310
Helix 38	AE2	F	81	85	Right-handed 310
Helix 39	AE3	C	281	290	Right-handed alpha
Helix 40	AE4	C	602	612	Right-handed alpha
Helix 41	AE5	C	719	725	Right-handed alpha
Helix 42	AE6	C	728	735	Right-handed alpha
Helix 43	AE7	C	736	739	Right-handed 310
Helix 44	AE8	C	740	765	Right-handed alpha
Helix 45	AE9	C	798	805	Right-handed alpha
Helix 46	AF1	C	848	866	Right-handed alpha
Helix 47	AF2	C	867	872	Right-handed 310
Helix 48	AF3	C	879	889	Right-handed alpha
Helix 49	AF4	C	894	901	Right-handed alpha
Helix 50	AF5	C	901	923	Right-handed alpha
Helix 51	AF6	C	927	947	Right-handed alpha
Helix 52	AF7	C	948	950	Right-handed 310
Helix 53	AF8	C	958	966	Right-handed alpha
Helix 54	AF9	C	967	1015	Right-handed alpha
Helix 55	AG1	E	62	65	Right-handed 310
Helix 56	AG2	E	87	91	Right-handed 310
Helix 57	AG3	G	81	85	Right-handed 310

There are 57 sheets in PDB entry 8VPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	65	69	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	87	91	anti-parallel
Strand 5	A	183	190	anti-parallel
Strand 6	A	193	200	anti-parallel
Strand 7	A	217	222	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	C	551	553	parallel
Strand 3	C	559	563	anti-parallel
Strand 4	C	570	575	anti-parallel
Strand 5	C	532	540	anti-parallel
Strand 6	C	524	529	anti-parallel
Strand 7	C	312	314	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	59	first strand
Strand 2	A	258	266	anti-parallel
Strand 3	A	272	277	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	104	first strand
Strand 2	A	230	235	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	M	108	110	anti-parallel
Strand 3	M	95	105	anti-parallel
Strand 4	M	32	37	anti-parallel
Strand 5	M	47	51	anti-parallel
Strand 6	M	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	M	108	110	anti-parallel
Strand 3	M	95	105	anti-parallel
Strand 4	M	115	118	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	306	first strand
Strand 2	A	578	585	anti-parallel
Strand 3	A	595	599	anti-parallel
Strand 4	A	634	637	anti-parallel
Strand 5	A	628	631	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	524	529	parallel
Strand 3	A	532	540	anti-parallel
Strand 4	A	570	575	anti-parallel
Strand 5	A	559	563	anti-parallel
Strand 6	A	551	553	anti-parallel
Strand 7	B	46	47	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	641	first strand
Strand 2	A	673	678	parallel
Strand 3	A	656	661	anti-parallel
Strand 4	A	650	653	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	685	first strand
Strand 2	B	769	771	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	709	first strand
Strand 2	A	1041	1060	anti-parallel
Strand 3	A	1029	1038	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	709	first strand
Strand 2	A	1041	1060	anti-parallel
Strand 3	A	1076	1079	anti-parallel
Strand 4	A	1084	1088	anti-parallel
Strand 5	A	1091	1096	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	718	first strand
Strand 2	A	840	842	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	771	first strand
Strand 2	C	683	685	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	779	first strand
Strand 2	A	782	783	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1063	1065	first strand
Strand 2	A	1068	1072	anti-parallel
Strand 3	A	1102	1107	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	16	25	anti-parallel
Strand 3	M	78	86	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	124	126	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	11	first strand
Strand 2	N	106	109	parallel
Strand 3	N	87	95	anti-parallel
Strand 4	N	35	40	anti-parallel
Strand 5	N	47	50	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	11	first strand
Strand 2	N	106	109	parallel
Strand 3	N	87	95	anti-parallel
Strand 4	N	99	102	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	23	first strand
Strand 2	N	72	77	anti-parallel
Strand 3	N	64	69	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	65	69	anti-parallel
Strand 3	B	252	256	anti-parallel
Strand 4	B	87	91	anti-parallel
Strand 5	B	183	190	anti-parallel
Strand 6	B	193	200	anti-parallel
Strand 7	B	217	222	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	59	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	272	277	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	104	first strand
Strand 2	B	230	235	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	D	108	110	anti-parallel
Strand 3	D	95	105	anti-parallel
Strand 4	D	32	37	anti-parallel
Strand 5	D	47	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	D	108	110	anti-parallel
Strand 3	D	95	105	anti-parallel
Strand 4	D	115	118	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	306	first strand
Strand 2	B	578	585	anti-parallel
Strand 3	B	595	599	anti-parallel
Strand 4	B	634	637	anti-parallel
Strand 5	B	628	631	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	524	529	parallel
Strand 3	B	532	540	anti-parallel
Strand 4	B	570	575	anti-parallel
Strand 5	B	559	563	anti-parallel
Strand 6	B	551	553	anti-parallel
Strand 7	C	46	47	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	641	first strand
Strand 2	B	673	678	parallel
Strand 3	B	656	661	anti-parallel
Strand 4	B	650	653	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	685	first strand
Strand 2	C	769	771	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	709	first strand
Strand 2	B	1041	1060	anti-parallel
Strand 3	B	1029	1038	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	709	first strand
Strand 2	B	1041	1060	anti-parallel
Strand 3	B	1076	1079	anti-parallel
Strand 4	B	1084	1088	anti-parallel
Strand 5	B	1091	1096	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	718	first strand
Strand 2	B	840	842	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	779	first strand
Strand 2	B	782	783	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1063	1065	first strand
Strand 2	B	1068	1072	anti-parallel
Strand 3	B	1102	1107	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	16	25	anti-parallel
Strand 3	D	78	86	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	124	126	parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	11	first strand
Strand 2	F	106	109	parallel
Strand 3	F	87	95	anti-parallel
Strand 4	F	35	40	anti-parallel
Strand 5	F	47	50	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	11	first strand
Strand 2	F	106	109	parallel
Strand 3	F	87	95	anti-parallel
Strand 4	F	99	102	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	72	77	anti-parallel
Strand 3	F	64	69	anti-parallel

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There are 7 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	65	69	anti-parallel
Strand 3	C	252	256	anti-parallel
Strand 4	C	87	91	anti-parallel
Strand 5	C	183	190	anti-parallel
Strand 6	C	193	200	anti-parallel
Strand 7	C	217	222	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	59	first strand
Strand 2	C	258	266	anti-parallel
Strand 3	C	272	277	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	104	first strand
Strand 2	C	230	235	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	E	108	110	anti-parallel
Strand 3	E	95	105	anti-parallel
Strand 4	E	32	37	anti-parallel
Strand 5	E	47	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	E	108	110	anti-parallel
Strand 3	E	95	105	anti-parallel
Strand 4	E	115	118	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	306	first strand
Strand 2	C	578	585	anti-parallel
Strand 3	C	595	599	anti-parallel
Strand 4	C	634	637	anti-parallel
Strand 5	C	628	631	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	640	641	first strand
Strand 2	C	673	678	parallel
Strand 3	C	656	661	anti-parallel
Strand 4	C	650	653	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	709	first strand
Strand 2	C	1041	1060	anti-parallel
Strand 3	C	1029	1038	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	709	first strand
Strand 2	C	1041	1060	anti-parallel
Strand 3	C	1076	1079	anti-parallel
Strand 4	C	1084	1088	anti-parallel
Strand 5	C	1091	1096	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	718	first strand
Strand 2	C	840	842	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	779	first strand
Strand 2	C	782	783	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1063	1065	first strand
Strand 2	C	1068	1072	anti-parallel
Strand 3	C	1102	1107	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	16	25	anti-parallel
Strand 3	E	78	86	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	124	126	parallel

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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	106	109	parallel
Strand 3	G	87	95	anti-parallel
Strand 4	G	35	40	anti-parallel
Strand 5	G	47	50	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	106	109	parallel
Strand 3	G	87	95	anti-parallel
Strand 4	G	99	102	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	23	first strand
Strand 2	G	72	77	anti-parallel
Strand 3	G	64	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VPF