Analysis of interatomic Contacts of Structural Units in PDB entry:
8VPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VPM entry

There is 1 chain in PDB entry 8VPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6HIS 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8VPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
23 29Right-handed alpha
Helix 3
AA3
A
30 32Right-handed 310
Helix 4
AA4
A
39 57Right-handed alpha
Helix 5
AA5
A
94 98Right-handed 310
Helix 6
AA6
A
122 147Right-handed alpha
Helix 7
AA7
A
181 193Right-handed alpha
Helix 8
AA8
A
205 207Right-handed 310
Helix 9
AA9
A
229 231Right-handed 310
Helix 10
AB1
A
232 249Right-handed alpha
Helix 11
AB2
A
269 273Right-handed 310
Helix 12
AB3
A
281 288Right-handed alpha
Helix 13
AB4
A
315 319Right-handed 310
Helix 14
AB5
A
320 339Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8VPM.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 69first strand
Strand 2
A
79 88anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
99 106parallel
Strand 5
A
209 216parallel
Strand 6
A
292 296parallel
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