Analysis of interatomic Contacts of Structural Units in PDB entry:
8VPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VPN entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8VPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 52ARG 54
A
 PHE 56ASN 59
A
 ILE 61ASN 72
A
 THR 74CYS 1019
B
 GLY 136GLN 1020
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 8VPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 90Right-handed alpha
Helix 2
AA2
A
141 150Right-handed alpha
Helix 3
AA3
A
152 157Right-handed alpha
Helix 4
AA4
A
157 166Right-handed alpha
Helix 5
AA5
A
166 193Right-handed alpha
Helix 6
AA6
A
200 211Right-handed alpha
Helix 7
AA7
A
211 248Right-handed alpha
Helix 8
AA8
A
254 275Right-handed alpha
Helix 9
AA9
A
277 303Right-handed alpha
Helix 10
AB1
A
308 313Right-handed alpha
Helix 11
AB2
A
320 327Right-handed alpha
Helix 12
AB3
A
338 347Right-handed alpha
Helix 13
AB4
A
348 350Right-handed 310
Helix 14
AB5
A
356 363Right-handed 310
Helix 15
AB6
A
365 393Right-handed alpha
Helix 16
AB7
A
403 407Right-handed 310
Helix 17
AB8
A
417 421Right-handed 310
Helix 18
AB9
A
426 433Right-handed alpha
Helix 19
AC1
A
444 450Right-handed alpha
Helix 20
AC2
A
452 485Right-handed alpha
Helix 21
AC3
A
490 494Right-handed 310
Helix 22
AC4
A
504 520Right-handed alpha
Helix 23
AC5
A
527 553Right-handed alpha
Helix 24
AC6
A
565 584Right-handed alpha
Helix 25
AC7
A
584 606Right-handed alpha
Helix 26
AC8
A
613 633Right-handed alpha
Helix 27
AC9
A
636 640Right-handed 310
Helix 28
AD1
A
654 666Right-handed alpha
Helix 29
AD2
A
685 701Right-handed alpha
Helix 30
AD3
A
715 727Right-handed alpha
Helix 31
AD4
A
749 766Right-handed alpha
Helix 32
AD5
A
819 823Right-handed 310
Helix 33
AD6
A
840 849Right-handed alpha
Helix 34
AD7
A
877 885Right-handed alpha
Helix 35
AD8
A
903 915Right-handed alpha
Helix 36
AD9
A
916 918Right-handed 310
Helix 37
AE1
A
925 933Right-handed alpha
Helix 38
AE2
A
942 948Right-handed alpha
Helix 39
AE3
A
949 966Right-handed alpha
Helix 40
AE4
A
985 997Right-handed alpha
Helix 41
AE5
A
1013 1018Right-handed 310
Helix 42
AE6
B
151 156Right-handed alpha
Helix 43
AE7
B
157 166Right-handed alpha
Helix 44
AE8
B
166 193Right-handed alpha
Helix 45
AE9
B
201 211Right-handed alpha
Helix 46
AF1
B
211 247Right-handed alpha
Helix 47
AF2
B
256 273Right-handed alpha
Helix 48
AF3
B
274 276Right-handed 310
Helix 49
AF4
B
278 304Right-handed alpha
Helix 50
AF5
B
308 315Right-handed alpha
Helix 51
AF6
B
320 328Right-handed alpha
Helix 52
AF7
B
338 347Right-handed alpha
Helix 53
AF8
B
350 359Right-handed alpha
Helix 54
AF9
B
369 395Right-handed alpha
Helix 55
AG1
B
417 422Right-handed 310
Helix 56
AG2
B
426 432Right-handed alpha
Helix 57
AG3
B
445 450Right-handed alpha
Helix 58
AG4
B
452 484Right-handed alpha
Helix 59
AG5
B
504 520Right-handed alpha
Helix 60
AG6
B
523 553Right-handed alpha
Helix 61
AG7
B
565 584Right-handed alpha
Helix 62
AG8
B
584 601Right-handed alpha
Helix 63
AG9
B
614 630Right-handed alpha
Helix 64
AH1
B
636 640Right-handed 310
Helix 65
AH2
B
654 666Right-handed alpha
Helix 66
AH3
B
686 702Right-handed alpha
Helix 67
AH4
B
715 727Right-handed alpha
Helix 68
AH5
B
749 766Right-handed alpha
Helix 69
AH6
B
819 823Right-handed 310
Helix 70
AH7
B
840 851Right-handed alpha
Helix 71
AH8
B
870 886Right-handed alpha
Helix 72
AH9
B
903 915Right-handed alpha
Helix 73
AI1
B
916 918Right-handed 310
Helix 74
AI2
B
925 930Right-handed 310
Helix 75
AI3
B
941 948Right-handed alpha
Helix 76
AI4
B
948 964Right-handed alpha
Helix 77
AI5
B
985 997Right-handed alpha
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There are 2 sheets in PDB entry 8VPN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 712first strand
Strand 2
A
671 677parallel
Strand 3
A
644 647parallel
Strand 4
A
736 740parallel
Strand 5
A
769 774parallel
Strand 6
A
1004 1008anti-parallel
Strand 7
A
969 975parallel
Strand 8
A
829 833parallel
Strand 9
A
859 863parallel
Strand 10
A
891 892parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
707 713first strand
Strand 2
B
671 678parallel
Strand 3
B
644 647parallel
Strand 4
B
736 740parallel
Strand 5
B
769 775parallel
Strand 6
B
1003 1008anti-parallel
Strand 7
B
972 975parallel
Strand 8
B
829 833parallel
Strand 9
B
859 865parallel
Strand 10
B
891 895parallel
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