Analysis of interatomic Contacts of Structural Units in PDB entry:
8VPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VPO entry

There is 1 chain in PDB entry 8VPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ASP 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8VPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 47Right-handed alpha
Helix 2
AA2
A
52 60Right-handed alpha
Helix 3
AA3
A
64 78Right-handed alpha
Helix 4
AA4
A
87 102Right-handed alpha
Helix 5
AA5
A
103 106Right-handed 310
Helix 6
AA6
A
135 144Right-handed alpha
Helix 7
AA7
A
145 148Right-handed 310
Helix 8
AA8
A
151 169Right-handed alpha
Helix 9
AA9
A
182 185Right-handed 310
Helix 10
AB1
A
186 197Right-handed alpha
Helix 11
AB2
A
217 227Right-handed alpha
Helix 12
AB3
A
252 265Right-handed alpha
Helix 13
AB4
A
279 284Right-handed 310
Helix 14
AB5
A
285 294Right-handed alpha
Helix 15
AB6
A
307 313Right-handed alpha
Helix 16
AB7
A
314 332Right-handed alpha
Helix 17
AB8
A
338 349Right-handed alpha
Helix 18
AB9
A
351 356Right-handed alpha
Helix 19
AC1
A
390 397Right-handed alpha
Helix 20
AC2
A
397 405Right-handed alpha
Helix 21
AC3
A
411 415Right-handed 310
Helix 22
AC4
A
427 436Right-handed alpha
Helix 23
AC5
A
442 460Right-handed alpha
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There are 3 sheets in PDB entry 8VPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
81 83anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
31 36anti-parallel
Strand 4
A
465 466parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
298 303parallel
Strand 3
A
269 275parallel
Strand 4
A
231 234parallel
Strand 5
A
204 211parallel
Strand 6
A
173 179parallel
Strand 7
A
111 115parallel
Strand 8
A
366 369parallel
Strand 9
A
374 376anti-parallel
Strand 10
A
384 387anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il