Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VQA entry

There are 3 chains in PDB entry 8VQA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 706ASP 1146
B
 ALA 706ASP 1146
C
 ALA 706ASP 1146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8VQA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
737 743Right-handed alpha
Helix 2
AA2
A
746 755Right-handed alpha
Helix 3
AA3
A
758 783Right-handed alpha
Helix 4
AA4
A
816 824Right-handed alpha
Helix 5
AA5
A
834 841Right-handed alpha
Helix 6
AA6
A
848 855Right-handed alpha
Helix 7
AA7
A
866 879Right-handed alpha
Helix 8
AA8
A
897 907Right-handed alpha
Helix 9
AA9
A
908 910Right-handed 310
Helix 10
AB1
A
913 918Right-handed alpha
Helix 11
AB2
A
919 938Right-handed alpha
Helix 12
AB3
A
945 966Right-handed alpha
Helix 13
AB4
A
977 982Right-handed alpha
Helix 14
AB5
A
985 1033Right-handed alpha
Helix 15
AB6
A
1141 1146Right-handed alpha
Helix 16
AB7
B
737 743Right-handed alpha
Helix 17
AB8
B
746 755Right-handed alpha
Helix 18
AB9
B
758 783Right-handed alpha
Helix 19
AC1
B
816 824Right-handed alpha
Helix 20
AC2
B
834 841Right-handed alpha
Helix 21
AC3
B
848 855Right-handed alpha
Helix 22
AC4
B
866 879Right-handed alpha
Helix 23
AC5
B
897 907Right-handed alpha
Helix 24
AC6
B
908 910Right-handed 310
Helix 25
AC7
B
913 918Right-handed alpha
Helix 26
AC8
B
919 938Right-handed alpha
Helix 27
AC9
B
945 966Right-handed alpha
Helix 28
AD1
B
977 982Right-handed alpha
Helix 29
AD2
B
985 1033Right-handed alpha
Helix 30
AD3
B
1141 1146Right-handed alpha
Helix 31
AD4
C
737 743Right-handed alpha
Helix 32
AD5
C
746 755Right-handed alpha
Helix 33
AD6
C
758 783Right-handed alpha
Helix 34
AD7
C
816 824Right-handed alpha
Helix 35
AD8
C
834 841Right-handed alpha
Helix 36
AD9
C
848 855Right-handed alpha
Helix 37
AE1
C
866 879Right-handed alpha
Helix 38
AE2
C
897 907Right-handed alpha
Helix 39
AE3
C
908 910Right-handed 310
Helix 40
AE4
C
913 918Right-handed alpha
Helix 41
AE5
C
919 938Right-handed alpha
Helix 42
AE6
C
945 966Right-handed alpha
Helix 43
AE7
C
977 982Right-handed alpha
Helix 44
AE8
C
985 1033Right-handed alpha
Helix 45
AE9
C
1141 1146Right-handed alpha
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There are 12 sheets in PDB entry 8VQA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 727first strand
Strand 2
A
1059 1077anti-parallel
Strand 3
A
1047 1056anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 727first strand
Strand 2
A
1059 1077anti-parallel
Strand 3
A
1094 1097anti-parallel
Strand 4
A
1102 1105anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 736first strand
Strand 2
A
858 860anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1122first strand
Strand 2
A
1087 1090anti-parallel
Strand 3
A
1080 1082anti-parallel
Strand 4
A
1132 1134parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
711 727first strand
Strand 2
B
1059 1077anti-parallel
Strand 3
B
1047 1056anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
711 727first strand
Strand 2
B
1059 1077anti-parallel
Strand 3
B
1094 1097anti-parallel
Strand 4
B
1102 1105anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
734 736first strand
Strand 2
B
858 860anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1120 1122first strand
Strand 2
B
1087 1090anti-parallel
Strand 3
B
1080 1082anti-parallel
Strand 4
B
1132 1134parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
711 727first strand
Strand 2
C
1059 1077anti-parallel
Strand 3
C
1047 1056anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
711 727first strand
Strand 2
C
1059 1077anti-parallel
Strand 3
C
1094 1097anti-parallel
Strand 4
C
1102 1105anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
734 736first strand
Strand 2
C
858 860anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1120 1122first strand
Strand 2
C
1087 1090anti-parallel
Strand 3
C
1080 1082anti-parallel
Strand 4
C
1132 1134parallel
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