Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VQB entry

There are 3 chains in PDB entry 8VQB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 705	ASP 1146
B	VAL 705	ASP 1146
C	VAL 705	ASP 1146

There are 51 helices in PDB entry 8VQB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	737	744	Right-handed alpha
Helix 2	AA2	A	746	755	Right-handed alpha
Helix 3	AA3	A	758	783	Right-handed alpha
Helix 4	AA4	A	811	815	Right-handed 310
Helix 5	AA5	A	816	824	Right-handed alpha
Helix 6	AA6	A	834	841	Right-handed alpha
Helix 7	AA7	A	849	853	Right-handed alpha
Helix 8	AA8	A	866	885	Right-handed alpha
Helix 9	AA9	A	886	890	Right-handed 310
Helix 10	AB1	A	897	907	Right-handed alpha
Helix 11	AB2	A	908	910	Right-handed 310
Helix 12	AB3	A	913	919	Right-handed alpha
Helix 13	AB4	A	919	941	Right-handed alpha
Helix 14	AB5	A	945	966	Right-handed alpha
Helix 15	AB6	A	976	982	Right-handed alpha
Helix 16	AB7	A	985	1033	Right-handed alpha
Helix 17	AB8	A	1141	1146	Right-handed alpha
Helix 18	AB9	B	737	744	Right-handed alpha
Helix 19	AC1	B	746	755	Right-handed alpha
Helix 20	AC2	B	758	783	Right-handed alpha
Helix 21	AC3	B	811	815	Right-handed 310
Helix 22	AC4	B	816	824	Right-handed alpha
Helix 23	AC5	B	834	841	Right-handed alpha
Helix 24	AC6	B	849	853	Right-handed alpha
Helix 25	AC7	B	866	885	Right-handed alpha
Helix 26	AC8	B	886	890	Right-handed 310
Helix 27	AC9	B	897	907	Right-handed alpha
Helix 28	AD1	B	908	910	Right-handed 310
Helix 29	AD2	B	913	919	Right-handed alpha
Helix 30	AD3	B	919	941	Right-handed alpha
Helix 31	AD4	B	945	966	Right-handed alpha
Helix 32	AD5	B	976	982	Right-handed alpha
Helix 33	AD6	B	985	1033	Right-handed alpha
Helix 34	AD7	B	1141	1146	Right-handed alpha
Helix 35	AD8	C	737	744	Right-handed alpha
Helix 36	AD9	C	746	755	Right-handed alpha
Helix 37	AE1	C	758	783	Right-handed alpha
Helix 38	AE2	C	811	815	Right-handed 310
Helix 39	AE3	C	816	824	Right-handed alpha
Helix 40	AE4	C	834	841	Right-handed alpha
Helix 41	AE5	C	849	853	Right-handed alpha
Helix 42	AE6	C	866	885	Right-handed alpha
Helix 43	AE7	C	886	890	Right-handed 310
Helix 44	AE8	C	897	907	Right-handed alpha
Helix 45	AE9	C	908	910	Right-handed 310
Helix 46	AF1	C	913	919	Right-handed alpha
Helix 47	AF2	C	919	941	Right-handed alpha
Helix 48	AF3	C	945	966	Right-handed alpha
Helix 49	AF4	C	976	982	Right-handed alpha
Helix 50	AF5	C	985	1033	Right-handed alpha
Helix 51	AF6	C	1141	1146	Right-handed alpha

There are 12 sheets in PDB entry 8VQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	715	first strand
Strand 2	A	1072	1078	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	728	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	715	first strand
Strand 2	B	1072	1078	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	715	first strand
Strand 2	C	1072	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	728	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	858	861	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VQB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQB