Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VQC entry

There are 2 chains in PDB entry 8VQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 60ALA 1521
H
 VAL 1ARG 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8VQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 111Right-handed alpha
Helix 2
AA2
A
128 139Right-handed alpha
Helix 3
AA3
A
139 157Right-handed alpha
Helix 4
AA4
A
165 188Right-handed alpha
Helix 5
AA5
A
191 197Right-handed alpha
Helix 6
AA6
A
199 216Right-handed alpha
Helix 7
AA7
A
228 240Right-handed 310
Helix 8
AA8
A
243 280Right-handed alpha
Helix 9
AA9
A
303 311Right-handed alpha
Helix 10
AB1
A
360 373Right-handed alpha
Helix 11
AB2
A
376 389Right-handed alpha
Helix 12
AB3
A
392 402Right-handed alpha
Helix 13
AB4
A
403 431Right-handed alpha
Helix 14
AB5
A
503 518Right-handed alpha
Helix 15
AB6
A
518 537Right-handed alpha
Helix 16
AB7
A
544 573Right-handed alpha
Helix 17
AB8
A
574 579Right-handed alpha
Helix 18
AB9
A
581 601Right-handed alpha
Helix 19
AC1
A
608 613Right-handed alpha
Helix 20
AC2
A
614 619Right-handed alpha
Helix 21
AC3
A
620 623Right-handed 310
Helix 22
AC4
A
626 636Right-handed alpha
Helix 23
AC5
A
637 670Right-handed alpha
Helix 24
AC6
A
686 700Right-handed alpha
Helix 25
AC7
A
702 712Right-handed alpha
Helix 26
AC8
A
714 716Right-handed 310
Helix 27
AC9
A
717 727Right-handed alpha
Helix 28
AD1
A
731 744Right-handed alpha
Helix 29
AD2
A
834 855Right-handed alpha
Helix 30
AD3
A
855 875Right-handed alpha
Helix 31
AD4
A
883 912Right-handed alpha
Helix 32
AD5
A
913 920Right-handed alpha
Helix 33
AD6
A
920 942Right-handed alpha
Helix 34
AD7
A
953 958Right-handed alpha
Helix 35
AD8
A
958 963Right-handed alpha
Helix 36
AD9
A
964 966Right-handed 310
Helix 37
AE1
A
967 1005Right-handed alpha
Helix 38
AE2
A
1026 1033Right-handed alpha
Helix 39
AE3
A
1046 1059Right-handed alpha
Helix 40
AE4
A
1062 1071Right-handed alpha
Helix 41
AE5
A
1088 1097Right-handed alpha
Helix 42
AE6
A
1105 1124Right-handed alpha
Helix 43
AE7
A
1131 1146Right-handed alpha
Helix 44
AE8
A
1157 1168Right-handed alpha
Helix 45
AE9
A
1169 1189Right-handed alpha
Helix 46
AF1
A
1195 1224Right-handed alpha
Helix 47
AF2
A
1234 1257Right-handed alpha
Helix 48
AF3
A
1259 1268Right-handed alpha
Helix 49
AF4
A
1269 1273Right-handed 310
Helix 50
AF5
A
1282 1295Right-handed alpha
Helix 51
AF6
A
1295 1321Right-handed alpha
Helix 52
AF7
A
1338 1351Right-handed alpha
Helix 53
AF8
A
1354 1363Right-handed alpha
Helix 54
AF9
A
1384 1398Right-handed alpha
Helix 55
AG1
A
1401 1424Right-handed alpha
Helix 56
AG2
A
1426 1439Right-handed alpha
Helix 57
AG3
A
1451 1459Right-handed alpha
Helix 58
AG4
A
1470 1477Right-handed alpha
Helix 59
AG5
A
1488 1505Right-handed alpha
Helix 60
AG6
A
1508 1521Right-handed alpha
Helix 61
AG7
H
18 29Right-handed alpha
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There are 3 sheets in PDB entry 8VQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
341 342anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1009 1012first strand
Strand 2
A
1036 1039anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
34 35first strand
Strand 2
H
47 48anti-parallel
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