Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VQE entry

There are 2 chains in PDB entry 8VQE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	GLU 542
B	GLN 24	GLU 542

There are 32 helices in PDB entry 8VQE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	40	Right-handed 310
Helix 2	AA2	A	41	51	Right-handed alpha
Helix 3	AA3	A	71	77	Right-handed 310
Helix 4	AA4	A	168	173	Right-handed alpha
Helix 5	AA5	A	208	212	Right-handed 310
Helix 6	AA6	A	231	235	Right-handed 310
Helix 7	AA7	A	248	250	Right-handed 310
Helix 8	AA8	A	347	352	Right-handed 310
Helix 9	AA9	A	360	365	Right-handed 310
Helix 10	AB1	A	377	382	Right-handed 310
Helix 11	AB2	A	393	401	Right-handed 310
Helix 12	AB3	A	422	426	Right-handed 310
Helix 13	AB4	A	436	439	Right-handed 310
Helix 14	AB5	A	481	486	Right-handed alpha
Helix 15	AB6	A	500	507	Right-handed alpha
Helix 16	AB7	B	38	40	Right-handed 310
Helix 17	AB8	B	41	51	Right-handed alpha
Helix 18	AB9	B	71	77	Right-handed 310
Helix 19	AC1	B	107	110	Right-handed 310
Helix 20	AC2	B	168	173	Right-handed alpha
Helix 21	AC3	B	175	180	Right-handed 310
Helix 22	AC4	B	199	203	Right-handed 310
Helix 23	AC5	B	208	212	Right-handed 310
Helix 24	AC6	B	231	235	Right-handed 310
Helix 25	AC7	B	347	351	Right-handed 310
Helix 26	AC8	B	360	365	Right-handed 310
Helix 27	AC9	B	377	383	Right-handed alpha
Helix 28	AD1	B	395	401	Right-handed 310
Helix 29	AD2	B	422	426	Right-handed 310
Helix 30	AD3	B	436	439	Right-handed 310
Helix 31	AD4	B	481	486	Right-handed alpha
Helix 32	AD5	B	500	508	Right-handed alpha

There are 20 sheets in PDB entry 8VQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	55	57	parallel
Strand 3	A	79	80	parallel
Strand 4	A	101	102	parallel
Strand 5	A	147	148	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	84	87	parallel
Strand 3	A	112	117	parallel
Strand 4	A	152	156	parallel
Strand 5	A	182	184	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	252	255	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	275	first strand
Strand 2	A	280	283	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	291	first strand
Strand 2	A	294	296	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	312	first strand
Strand 2	A	304	305	anti-parallel
Strand 3	A	329	333	parallel
Strand 4	A	319	322	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	405	406	parallel
Strand 3	A	430	431	parallel
Strand 4	A	460	461	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	410	412	parallel
Strand 3	A	441	446	parallel
Strand 4	A	465	469	parallel
Strand 5	A	493	496	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	539	540	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	55	57	parallel
Strand 3	B	79	80	parallel
Strand 4	B	101	102	parallel
Strand 5	B	147	148	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	84	87	parallel
Strand 3	B	112	117	parallel
Strand 4	B	152	156	parallel
Strand 5	B	182	184	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	252	255	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	264	265	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	275	first strand
Strand 2	B	280	283	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	291	first strand
Strand 2	B	294	296	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	311	312	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	322	first strand
Strand 2	B	330	333	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	B	369	371	parallel
Strand 3	B	405	406	parallel
Strand 4	B	430	431	parallel
Strand 5	B	460	461	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	410	412	parallel
Strand 3	B	441	446	parallel
Strand 4	B	465	469	parallel
Strand 5	B	493	496	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	539	540	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VQE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQE