Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VQI entry

There are 4 chains in PDB entry 8VQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 22ARG 423
B
 MET 1ARG 419
C
 ARG 22ARG 423
D
 MET 1GLU 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 8VQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 32Right-handed 310
Helix 2
AA2
A
33 41Right-handed alpha
Helix 3
AA3
A
51 63Right-handed alpha
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
85 103Right-handed alpha
Helix 7
AA7
A
114 121Right-handed alpha
Helix 8
AA8
A
123 135Right-handed alpha
Helix 9
AA9
A
154 165Right-handed alpha
Helix 10
AB1
A
166 168Right-handed 310
Helix 11
AB2
A
183 198Right-handed alpha
Helix 12
AB3
A
209 213Right-handed 310
Helix 13
AB4
A
230 240Right-handed alpha
Helix 14
AB5
A
250 267Right-handed alpha
Helix 15
AB6
A
269 293Right-handed alpha
Helix 16
AB7
A
294 296Right-handed 310
Helix 17
AB8
A
308 319Right-handed alpha
Helix 18
AB9
A
333 344Right-handed alpha
Helix 19
AC1
A
355 367Right-handed alpha
Helix 20
AC2
A
374 385Right-handed alpha
Helix 21
AC3
A
391 397Right-handed alpha
Helix 22
AC4
A
402 423Right-handed alpha
Helix 23
AC5
B
11 21Right-handed alpha
Helix 24
AC6
B
35 38Right-handed 310
Helix 25
AC7
B
39 46Right-handed alpha
Helix 26
AC8
B
66 85Right-handed alpha
Helix 27
AC9
B
94 100Right-handed alpha
Helix 28
AD1
B
103 112Right-handed alpha
Helix 29
AD2
B
128 145Right-handed alpha
Helix 30
AD3
B
167 183Right-handed alpha
Helix 31
AD4
B
195 201Right-handed alpha
Helix 32
AD5
B
202 205Right-handed 310
Helix 33
AD6
B
212 226Right-handed alpha
Helix 34
AD7
B
238 254Right-handed alpha
Helix 35
AD8
B
265 272Right-handed alpha
Helix 36
AD9
B
273 277Right-handed 310
Helix 37
AE1
B
288 302Right-handed alpha
Helix 38
AE2
B
314 316Right-handed 310
Helix 39
AE3
B
317 328Right-handed alpha
Helix 40
AE4
B
337 349Right-handed alpha
Helix 41
AE5
B
356 367Right-handed alpha
Helix 42
AE6
B
390 419Right-handed alpha
Helix 43
AE7
C
31 41Right-handed alpha
Helix 44
AE8
C
51 63Right-handed alpha
Helix 45
AE9
C
64 69Right-handed 310
Helix 46
AF1
C
78 84Right-handed alpha
Helix 47
AF2
C
84 103Right-handed alpha
Helix 48
AF3
C
114 121Right-handed alpha
Helix 49
AF4
C
123 136Right-handed alpha
Helix 50
AF5
C
154 165Right-handed alpha
Helix 51
AF6
C
166 168Right-handed 310
Helix 52
AF7
C
183 198Right-handed alpha
Helix 53
AF8
C
229 239Right-handed alpha
Helix 54
AF9
C
252 267Right-handed alpha
Helix 55
AG1
C
269 292Right-handed alpha
Helix 56
AG2
C
308 319Right-handed alpha
Helix 57
AG3
C
333 344Right-handed alpha
Helix 58
AG4
C
355 367Right-handed alpha
Helix 59
AG5
C
374 384Right-handed alpha
Helix 60
AG6
C
392 394Right-handed 310
Helix 61
AG7
C
404 423Right-handed alpha
Helix 62
AG8
D
11 23Right-handed alpha
Helix 63
AG9
D
35 38Right-handed 310
Helix 64
AH1
D
39 46Right-handed alpha
Helix 65
AH2
D
66 85Right-handed alpha
Helix 66
AH3
D
94 100Right-handed alpha
Helix 67
AH4
D
103 112Right-handed alpha
Helix 68
AH5
D
128 145Right-handed alpha
Helix 69
AH6
D
167 183Right-handed alpha
Helix 70
AH7
D
195 201Right-handed alpha
Helix 71
AH8
D
202 205Right-handed 310
Helix 72
AH9
D
212 226Right-handed alpha
Helix 73
AI1
D
238 254Right-handed alpha
Helix 74
AI2
D
265 272Right-handed alpha
Helix 75
AI3
D
273 279Right-handed 310
Helix 76
AI4
D
288 303Right-handed alpha
Helix 77
AI5
D
314 316Right-handed 310
Helix 78
AI6
D
317 328Right-handed alpha
Helix 79
AI7
D
337 349Right-handed alpha
Helix 80
AI8
D
356 367Right-handed alpha
Helix 81
AI9
D
390 419Right-handed alpha
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There are 12 sheets in PDB entry 8VQI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
108 113parallel
Strand 3
A
44 50parallel
Strand 4
A
72 76parallel
Strand 5
B
3 4anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
221 224parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
323 329parallel
Strand 3
A
299 302parallel
Strand 4
A
370 373parallel
Strand 5
A
387 390parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
26 31parallel
Strand 3
B
88 93parallel
Strand 4
B
117 119parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 190first strand
Strand 2
B
155 159parallel
Strand 3
B
207 210parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 334first strand
Strand 2
B
305 312parallel
Strand 3
B
281 285parallel
Strand 4
B
352 355parallel
Strand 5
B
370 372parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 145first strand
Strand 2
C
108 113parallel
Strand 3
C
44 48parallel
Strand 4
C
72 76parallel
Strand 5
D
2 4anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 204first strand
Strand 2
C
176 179parallel
Strand 3
C
221 224parallel
Strand 4
C
242 243parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
349 352first strand
Strand 2
C
323 329parallel
Strand 3
C
299 302parallel
Strand 4
C
370 373parallel
Strand 5
C
388 390parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 57first strand
Strand 2
D
26 31parallel
Strand 3
D
88 93parallel
Strand 4
D
117 119parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 190first strand
Strand 2
D
155 159parallel
Strand 3
D
207 210parallel
Strand 4
D
231 232parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
333 334first strand
Strand 2
D
306 312parallel
Strand 3
D
282 285parallel
Strand 4
D
352 355parallel
Strand 5
D
370 372parallel
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