Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VQJ entry

There are 6 chains in PDB entry 8VQJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	ARG 419
B	MET 1	GLU 420
C	ARG 22	ARG 424
D	LYS 2	PRO 430
E	THR 7	PHE 296
F	THR 7	LEU 293

There are102 helices in PDB entry 8VQJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	31	Right-handed 310
Helix 2	AA2	A	32	41	Right-handed alpha
Helix 3	AA3	A	51	63	Right-handed alpha
Helix 4	AA4	A	64	69	Right-handed 310
Helix 5	AA5	A	78	84	Right-handed alpha
Helix 6	AA6	A	85	103	Right-handed alpha
Helix 7	AA7	A	114	120	Right-handed alpha
Helix 8	AA8	A	123	136	Right-handed alpha
Helix 9	AA9	A	154	165	Right-handed alpha
Helix 10	AB1	A	183	198	Right-handed alpha
Helix 11	AB2	A	207	211	Right-handed 310
Helix 12	AB3	A	230	240	Right-handed alpha
Helix 13	AB4	A	250	266	Right-handed alpha
Helix 14	AB5	A	269	277	Right-handed alpha
Helix 15	AB6	A	277	293	Right-handed alpha
Helix 16	AB7	A	294	296	Right-handed 310
Helix 17	AB8	A	308	320	Right-handed alpha
Helix 18	AB9	A	333	344	Right-handed alpha
Helix 19	AC1	A	355	367	Right-handed alpha
Helix 20	AC2	A	374	384	Right-handed alpha
Helix 21	AC3	A	391	395	Right-handed alpha
Helix 22	AC4	A	404	414	Right-handed alpha
Helix 23	AC5	B	11	23	Right-handed alpha
Helix 24	AC6	B	35	37	Right-handed 310
Helix 25	AC7	B	38	46	Right-handed alpha
Helix 26	AC8	B	66	85	Right-handed alpha
Helix 27	AC9	B	94	100	Right-handed alpha
Helix 28	AD1	B	103	112	Right-handed alpha
Helix 29	AD2	B	128	145	Right-handed alpha
Helix 30	AD3	B	167	183	Right-handed alpha
Helix 31	AD4	B	195	202	Right-handed alpha
Helix 32	AD5	B	203	205	Right-handed 310
Helix 33	AD6	B	212	227	Right-handed alpha
Helix 34	AD7	B	238	254	Right-handed alpha
Helix 35	AD8	B	265	271	Right-handed alpha
Helix 36	AD9	B	272	279	Right-handed 310
Helix 37	AE1	B	288	303	Right-handed alpha
Helix 38	AE2	B	314	316	Right-handed 310
Helix 39	AE3	B	317	328	Right-handed alpha
Helix 40	AE4	B	337	349	Right-handed alpha
Helix 41	AE5	B	356	367	Right-handed alpha
Helix 42	AE6	B	390	420	Right-handed alpha
Helix 43	AE7	C	29	32	Right-handed 310
Helix 44	AE8	C	33	41	Right-handed alpha
Helix 45	AE9	C	51	60	Right-handed alpha
Helix 46	AF1	C	62	67	Right-handed alpha
Helix 47	AF2	C	79	84	Right-handed alpha
Helix 48	AF3	C	84	103	Right-handed alpha
Helix 49	AF4	C	114	120	Right-handed alpha
Helix 50	AF5	C	123	134	Right-handed alpha
Helix 51	AF6	C	154	165	Right-handed alpha
Helix 52	AF7	C	183	198	Right-handed alpha
Helix 53	AF8	C	209	213	Right-handed 310
Helix 54	AF9	C	229	240	Right-handed alpha
Helix 55	AG1	C	251	266	Right-handed alpha
Helix 56	AG2	C	269	296	Right-handed alpha
Helix 57	AG3	C	308	319	Right-handed alpha
Helix 58	AG4	C	333	344	Right-handed alpha
Helix 59	AG5	C	355	367	Right-handed alpha
Helix 60	AG6	C	374	384	Right-handed alpha
Helix 61	AG7	C	392	397	Right-handed alpha
Helix 62	AG8	C	404	423	Right-handed alpha
Helix 63	AG9	D	11	23	Right-handed alpha
Helix 64	AH1	D	37	47	Right-handed alpha
Helix 65	AH2	D	66	85	Right-handed alpha
Helix 66	AH3	D	94	100	Right-handed alpha
Helix 67	AH4	D	103	112	Right-handed alpha
Helix 68	AH5	D	128	145	Right-handed alpha
Helix 69	AH6	D	168	182	Right-handed alpha
Helix 70	AH7	D	195	202	Right-handed alpha
Helix 71	AH8	D	203	205	Right-handed 310
Helix 72	AH9	D	212	226	Right-handed alpha
Helix 73	AI1	D	238	254	Right-handed alpha
Helix 74	AI2	D	265	272	Right-handed alpha
Helix 75	AI3	D	273	276	Right-handed 310
Helix 76	AI4	D	288	302	Right-handed alpha
Helix 77	AI5	D	317	329	Right-handed alpha
Helix 78	AI6	D	337	349	Right-handed alpha
Helix 79	AI7	D	356	367	Right-handed alpha
Helix 80	AI8	D	378	382	Right-handed 310
Helix 81	AI9	D	390	419	Right-handed alpha
Helix 82	AJ1	E	45	59	Right-handed alpha
Helix 83	AJ2	E	126	131	Right-handed alpha
Helix 84	AJ3	E	131	141	Right-handed alpha
Helix 85	AJ4	E	142	147	Right-handed alpha
Helix 86	AJ5	E	165	170	Right-handed alpha
Helix 87	AJ6	E	180	197	Right-handed alpha
Helix 88	AJ7	E	216	226	Right-handed alpha
Helix 89	AJ8	E	241	248	Right-handed alpha
Helix 90	AJ9	E	261	274	Right-handed alpha
Helix 91	AK1	F	15	20	Right-handed alpha
Helix 92	AK2	F	44	59	Right-handed alpha
Helix 93	AK3	F	74	79	Right-handed alpha
Helix 94	AK4	F	84	92	Right-handed alpha
Helix 95	AK5	F	126	141	Right-handed alpha
Helix 96	AK6	F	142	147	Right-handed alpha
Helix 97	AK7	F	164	170	Right-handed alpha
Helix 98	AK8	F	180	200	Right-handed alpha
Helix 99	AK9	F	218	226	Right-handed alpha
Helix 100	AL1	F	243	248	Right-handed alpha
Helix 101	AL2	F	249	254	Right-handed alpha
Helix 102	AL3	F	256	276	Right-handed alpha

There are 16 sheets in PDB entry 8VQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	44	50	parallel
Strand 3	A	108	113	parallel
Strand 4	A	140	141	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	44	50	parallel
Strand 3	A	108	113	parallel
Strand 4	A	144	145	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	176	179	parallel
Strand 3	A	222	224	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	323	329	parallel
Strand 3	A	299	302	parallel
Strand 4	A	370	373	parallel
Strand 5	A	387	390	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	26	30	parallel
Strand 3	B	88	91	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	190	first strand
Strand 2	B	155	159	parallel
Strand 3	B	207	210	parallel
Strand 4	B	231	232	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	306	311	parallel
Strand 3	B	282	285	parallel
Strand 4	B	352	355	parallel
Strand 5	B	370	372	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	145	first strand
Strand 2	C	108	113	parallel
Strand 3	C	44	48	parallel
Strand 4	C	72	75	parallel
Strand 5	D	3	4	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	176	179	parallel
Strand 3	C	221	224	parallel
Strand 4	C	242	243	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	326	first strand
Strand 2	C	299	302	parallel
Strand 3	C	370	373	parallel
Strand 4	C	387	390	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	26	31	parallel
Strand 3	D	88	93	parallel
Strand 4	D	117	119	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	190	first strand
Strand 2	D	155	159	parallel
Strand 3	D	207	210	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	305	312	parallel
Strand 3	D	281	287	parallel
Strand 4	D	352	354	parallel
Strand 5	D	370	371	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	65	first strand
Strand 2	E	149	152	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	208	210	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	107	first strand
Strand 2	F	113	116	anti-parallel
Strand 3	F	62	66	parallel
Strand 4	F	149	155	parallel
Strand 5	F	32	38	parallel
Strand 6	F	172	177	parallel
Strand 7	F	204	210	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VQJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQJ