Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VQK entry

There are 2 chains in PDB entry 8VQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27ILE 427
B
 THR 27GLU 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8VQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 57Right-handed alpha
Helix 2
AA2
A
68 70Right-handed 310
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
93 102Right-handed alpha
Helix 5
AA5
A
106 118Right-handed alpha
Helix 6
AA6
A
119 122Right-handed 310
Helix 7
AA7
A
125 130Right-handed alpha
Helix 8
AA8
A
154 159Right-handed alpha
Helix 9
AA9
A
167 179Right-handed alpha
Helix 10
AB1
A
180 184Right-handed 310
Helix 11
AB2
A
195 209Right-handed alpha
Helix 12
AB3
A
224 239Right-handed alpha
Helix 13
AB4
A
247 257Right-handed alpha
Helix 14
AB5
A
269 277Right-handed alpha
Helix 15
AB6
A
278 280Right-handed 310
Helix 16
AB7
A
308 323Right-handed alpha
Helix 17
AB8
A
324 333Right-handed alpha
Helix 18
AB9
A
345 348Right-handed 310
Helix 19
AC1
A
349 354Right-handed alpha
Helix 20
AC2
A
355 362Right-handed alpha
Helix 21
AC3
A
363 371Right-handed alpha
Helix 22
AC4
A
372 375Right-handed 310
Helix 23
AC5
A
388 396Right-handed alpha
Helix 24
AC6
A
396 407Right-handed alpha
Helix 25
AC7
A
411 427Right-handed alpha
Helix 26
AC8
B
39 57Right-handed alpha
Helix 27
AC9
B
68 70Right-handed 310
Helix 28
AD1
B
71 82Right-handed alpha
Helix 29
AD2
B
93 102Right-handed alpha
Helix 30
AD3
B
106 118Right-handed alpha
Helix 31
AD4
B
119 122Right-handed 310
Helix 32
AD5
B
125 130Right-handed alpha
Helix 33
AD6
B
154 160Right-handed alpha
Helix 34
AD7
B
167 179Right-handed alpha
Helix 35
AD8
B
180 184Right-handed 310
Helix 36
AD9
B
195 209Right-handed alpha
Helix 37
AE1
B
224 239Right-handed alpha
Helix 38
AE2
B
247 257Right-handed alpha
Helix 39
AE3
B
268 277Right-handed alpha
Helix 40
AE4
B
278 280Right-handed 310
Helix 41
AE5
B
308 324Right-handed alpha
Helix 42
AE6
B
324 333Right-handed alpha
Helix 43
AE7
B
343 348Right-handed 310
Helix 44
AE8
B
349 354Right-handed alpha
Helix 45
AE9
B
355 361Right-handed alpha
Helix 46
AF1
B
363 371Right-handed alpha
Helix 47
AF2
B
372 375Right-handed 310
Helix 48
AF3
B
387 396Right-handed alpha
Helix 49
AF4
B
396 407Right-handed alpha
Helix 50
AF5
B
411 427Right-handed alpha
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There are 6 sheets in PDB entry 8VQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
29 35parallel
Strand 3
A
88 92parallel
Strand 4
A
295 303anti-parallel
Strand 5
A
141 153anti-parallel
Strand 6
A
262 266anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
29 35parallel
Strand 3
A
88 92parallel
Strand 4
A
295 303anti-parallel
Strand 5
A
141 153anti-parallel
Strand 6
A
282 285anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
384 385anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 66first strand
Strand 2
B
29 35parallel
Strand 3
B
88 92parallel
Strand 4
B
295 303anti-parallel
Strand 5
B
141 153anti-parallel
Strand 6
B
262 266anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 66first strand
Strand 2
B
29 35parallel
Strand 3
B
88 92parallel
Strand 4
B
295 303anti-parallel
Strand 5
B
141 153anti-parallel
Strand 6
B
282 285anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 381first strand
Strand 2
B
384 385anti-parallel
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