Analysis of interatomic Contacts of Structural Units in PDB entry:
8VQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VQR entry

There are 3 chains in PDB entry 8VQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21ALA 614
B
 SER 20ALA 614
E
 LEU 335TYR 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 8VQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 52Right-handed alpha
Helix 2
AA2
A
55 83Right-handed alpha
Helix 3
AA3
A
90 103Right-handed alpha
Helix 4
AA4
A
109 130Right-handed alpha
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
157 171Right-handed alpha
Helix 7
AA7
A
171 194Right-handed alpha
Helix 8
AA8
A
198 204Right-handed alpha
Helix 9
AA9
A
205 208Right-handed 310
Helix 10
AB1
A
220 252Right-handed alpha
Helix 11
AB2
A
265 267Right-handed 310
Helix 12
AB3
A
275 277Right-handed 310
Helix 13
AB4
A
278 283Right-handed alpha
Helix 14
AB5
A
293 300Right-handed alpha
Helix 15
AB6
A
303 319Right-handed alpha
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
366 385Right-handed alpha
Helix 18
AB9
A
386 388Right-handed 310
Helix 19
AC1
A
389 393Right-handed 310
Helix 20
AC2
A
399 412Right-handed alpha
Helix 21
AC3
A
414 421Right-handed alpha
Helix 22
AC4
A
431 447Right-handed alpha
Helix 23
AC5
A
448 465Right-handed alpha
Helix 24
AC6
A
469 471Right-handed 310
Helix 25
AC7
A
472 484Right-handed alpha
Helix 26
AC8
A
498 502Right-handed 310
Helix 27
AC9
A
503 508Right-handed alpha
Helix 28
AD1
A
513 533Right-handed alpha
Helix 29
AD2
A
538 542Right-handed 310
Helix 30
AD3
A
547 559Right-handed alpha
Helix 31
AD4
A
565 574Right-handed alpha
Helix 32
AD5
A
581 588Right-handed alpha
Helix 33
AD6
A
588 599Right-handed alpha
Helix 34
AD7
B
21 53Right-handed alpha
Helix 35
AD8
B
55 81Right-handed alpha
Helix 36
AD9
B
90 103Right-handed alpha
Helix 37
AE1
B
109 130Right-handed alpha
Helix 38
AE2
B
146 155Right-handed alpha
Helix 39
AE3
B
157 171Right-handed alpha
Helix 40
AE4
B
171 194Right-handed alpha
Helix 41
AE5
B
198 204Right-handed alpha
Helix 42
AE6
B
205 208Right-handed 310
Helix 43
AE7
B
220 232Right-handed alpha
Helix 44
AE8
B
233 252Right-handed alpha
Helix 45
AE9
B
265 267Right-handed 310
Helix 46
AF1
B
275 277Right-handed 310
Helix 47
AF2
B
278 283Right-handed alpha
Helix 48
AF3
B
293 300Right-handed alpha
Helix 49
AF4
B
303 319Right-handed alpha
Helix 50
AF5
B
324 331Right-handed alpha
Helix 51
AF6
B
366 385Right-handed alpha
Helix 52
AF7
B
386 388Right-handed 310
Helix 53
AF8
B
389 393Right-handed 310
Helix 54
AF9
B
397 412Right-handed alpha
Helix 55
AG1
B
414 421Right-handed alpha
Helix 56
AG2
B
431 447Right-handed alpha
Helix 57
AG3
B
448 465Right-handed alpha
Helix 58
AG4
B
469 471Right-handed 310
Helix 59
AG5
B
472 484Right-handed alpha
Helix 60
AG6
B
498 502Right-handed 310
Helix 61
AG7
B
503 508Right-handed alpha
Helix 62
AG8
B
513 533Right-handed alpha
Helix 63
AG9
B
538 542Right-handed 310
Helix 64
AH1
B
547 559Right-handed alpha
Helix 65
AH2
B
565 574Right-handed alpha
Helix 66
AH3
B
581 588Right-handed alpha
Helix 67
AH4
B
588 599Right-handed alpha
Helix 68
AH5
E
338 343Right-handed alpha
Helix 69
AH6
E
365 370Right-handed alpha
Helix 70
AH7
E
385 389Right-handed 310
Helix 71
AH8
E
405 410Right-handed 310
Helix 72
AH9
E
417 422Right-handed alpha
Helix 73
AI1
E
438 443Right-handed alpha
Helix 74
AI2
E
502 505Right-handed 310
Helix 75
AI3
F
338 343Right-handed alpha
Helix 76
AI4
F
365 371Right-handed alpha
Helix 77
AI5
F
385 390Right-handed 310
Helix 78
AI6
F
405 410Right-handed 310
Helix 79
AI7
F
417 422Right-handed alpha
Helix 80
AI8
F
438 443Right-handed alpha
Helix 81
AI9
F
502 505Right-handed 310
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There are 13 sheets in PDB entry 8VQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
141 143anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 352first strand
Strand 2
B
355 359anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 358first strand
Strand 2
E
394 403anti-parallel
Strand 3
E
507 516anti-parallel
Strand 4
E
431 437anti-parallel
Strand 5
E
378 380anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
361 362first strand
Strand 2
E
524 525parallel
Strand 3
E
391 392anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
354 358first strand
Strand 2
F
394 403anti-parallel
Strand 3
F
507 516anti-parallel
Strand 4
F
431 437anti-parallel
Strand 5
F
378 380anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
452 454first strand
Strand 2
F
492 494anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
473 474first strand
Strand 2
F
488 489anti-parallel
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