Analysis of interatomic Contacts of Structural Units in PDB entry:
8VR2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VR2 entry

There are 4 chains in PDB entry 8VR2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ASN 318
B	HIS 0	MET 325
C	HIS 0	ASN 318
D	MET 1	MET 319

There are 56 helices in PDB entry 8VR2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	27	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	63	71	Right-handed alpha
Helix 4	AA4	A	85	90	Right-handed alpha
Helix 5	AA5	A	92	115	Right-handed alpha
Helix 6	AA6	A	125	130	Right-handed 310
Helix 7	AA7	A	145	173	Right-handed alpha
Helix 8	AA8	A	193	204	Right-handed alpha
Helix 9	AA9	A	223	236	Right-handed alpha
Helix 10	AB1	A	237	240	Right-handed 310
Helix 11	AB2	A	255	266	Right-handed alpha
Helix 12	AB3	A	289	297	Right-handed alpha
Helix 13	AB4	A	303	318	Right-handed alpha
Helix 14	AB5	B	16	27	Right-handed alpha
Helix 15	AB6	B	42	46	Right-handed 310
Helix 16	AB7	B	63	71	Right-handed alpha
Helix 17	AB8	B	85	92	Right-handed alpha
Helix 18	AB9	B	92	115	Right-handed alpha
Helix 19	AC1	B	125	134	Right-handed 310
Helix 20	AC2	B	145	173	Right-handed alpha
Helix 21	AC3	B	193	204	Right-handed alpha
Helix 22	AC4	B	223	236	Right-handed alpha
Helix 23	AC5	B	237	240	Right-handed 310
Helix 24	AC6	B	248	250	Right-handed 310
Helix 25	AC7	B	255	266	Right-handed alpha
Helix 26	AC8	B	289	297	Right-handed alpha
Helix 27	AC9	B	303	318	Right-handed alpha
Helix 28	AD1	C	16	27	Right-handed alpha
Helix 29	AD2	C	42	46	Right-handed 310
Helix 30	AD3	C	63	71	Right-handed alpha
Helix 31	AD4	C	85	92	Right-handed alpha
Helix 32	AD5	C	92	115	Right-handed alpha
Helix 33	AD6	C	126	131	Right-handed alpha
Helix 34	AD7	C	132	134	Right-handed 310
Helix 35	AD8	C	145	173	Right-handed alpha
Helix 36	AD9	C	193	204	Right-handed alpha
Helix 37	AE1	C	223	236	Right-handed alpha
Helix 38	AE2	C	237	240	Right-handed 310
Helix 39	AE3	C	255	266	Right-handed alpha
Helix 40	AE4	C	289	297	Right-handed alpha
Helix 41	AE5	C	303	318	Right-handed alpha
Helix 42	AE6	D	16	27	Right-handed alpha
Helix 43	AE7	D	28	30	Right-handed 310
Helix 44	AE8	D	42	46	Right-handed 310
Helix 45	AE9	D	63	71	Right-handed alpha
Helix 46	AF1	D	92	115	Right-handed alpha
Helix 47	AF2	D	125	134	Right-handed 310
Helix 48	AF3	D	135	139	Right-handed 310
Helix 49	AF4	D	144	173	Right-handed alpha
Helix 50	AF5	D	193	204	Right-handed alpha
Helix 51	AF6	D	223	236	Right-handed alpha
Helix 52	AF7	D	237	240	Right-handed 310
Helix 53	AF8	D	248	250	Right-handed 310
Helix 54	AF9	D	255	267	Right-handed alpha
Helix 55	AG1	D	289	297	Right-handed alpha
Helix 56	AG2	D	303	318	Right-handed alpha

There are 12 sheets in PDB entry 8VR2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	31	36	parallel
Strand 3	A	8	12	parallel
Strand 4	A	76	79	parallel
Strand 5	A	119	123	parallel
Strand 6	A	176	181	parallel
Strand 7	A	242	246	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	217	222	parallel
Strand 3	A	252	254	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	272	275	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	58	first strand
Strand 2	B	31	36	parallel
Strand 3	B	8	12	parallel
Strand 4	B	76	79	parallel
Strand 5	B	119	123	parallel
Strand 6	B	176	181	parallel
Strand 7	B	242	246	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	217	222	parallel
Strand 3	B	252	254	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	272	275	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	31	36	parallel
Strand 3	C	8	12	parallel
Strand 4	C	76	79	parallel
Strand 5	C	119	123	parallel
Strand 6	C	176	181	parallel
Strand 7	C	242	246	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	217	222	parallel
Strand 3	C	252	254	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	272	275	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	58	first strand
Strand 2	D	31	36	parallel
Strand 3	D	8	12	parallel
Strand 4	D	76	79	parallel
Strand 5	D	119	123	parallel
Strand 6	D	176	181	parallel
Strand 7	D	242	246	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	217	222	parallel
Strand 3	D	252	254	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	272	275	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VR2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VR2