Analysis of interatomic Contacts of Structural Units in PDB entry:
8VR7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VR7 entry

There are 6 chains in PDB entry 8VR7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	ASN 176
B	GLY -1	ARG 175
C	GLY -1	GLN 174
D	MET 1	ARG 175
E	GLY -1	ILE 178
F	GLY -2	ARG 175

There are 30 helices in PDB entry 8VR7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-2	23	Right-handed alpha
Helix 2	AA2	A	27	33	Right-handed alpha
Helix 3	AA3	A	34	43	Right-handed alpha
Helix 4	AA4	A	100	106	Right-handed alpha
Helix 5	AA5	A	171	175	Right-handed 310
Helix 6	AA6	B	0	23	Right-handed alpha
Helix 7	AA7	B	27	32	Right-handed 310
Helix 8	AA8	B	34	42	Right-handed alpha
Helix 9	AA9	B	100	106	Right-handed alpha
Helix 10	AB1	B	171	175	Right-handed 310
Helix 11	AB2	C	0	23	Right-handed alpha
Helix 12	AB3	C	27	32	Right-handed 310
Helix 13	AB4	C	34	42	Right-handed alpha
Helix 14	AB5	C	100	106	Right-handed alpha
Helix 15	AB6	C	171	174	Right-handed 310
Helix 16	AB7	D	2	23	Right-handed alpha
Helix 17	AB8	D	27	33	Right-handed alpha
Helix 18	AB9	D	34	42	Right-handed alpha
Helix 19	AC1	D	100	106	Right-handed alpha
Helix 20	AC2	D	170	175	Right-handed alpha
Helix 21	AC3	E	0	23	Right-handed alpha
Helix 22	AC4	E	27	32	Right-handed 310
Helix 23	AC5	E	34	42	Right-handed alpha
Helix 24	AC6	E	100	106	Right-handed alpha
Helix 25	AC7	E	171	174	Right-handed 310
Helix 26	AC8	F	0	23	Right-handed alpha
Helix 27	AC9	F	27	32	Right-handed 310
Helix 28	AD1	F	34	42	Right-handed alpha
Helix 29	AD2	F	100	106	Right-handed alpha
Helix 30	AD3	F	171	175	Right-handed 310

There are 24 sheets in PDB entry 8VR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	B	55	62	anti-parallel
Strand 3	B	73	83	parallel
Strand 4	B	117	119	parallel
Strand 5	B	136	137	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	B	55	62	anti-parallel
Strand 3	B	73	83	parallel
Strand 4	B	94	95	parallel
Strand 5	B	130	131	parallel
Strand 6	B	148	149	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	67	68	parallel
Strand 3	A	88	89	parallel
Strand 4	A	124	125	parallel
Strand 5	A	142	143	parallel
Strand 6	A	157	160	parallel
Strand 7	A	165	169	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	117	119	parallel
Strand 3	A	73	83	parallel
Strand 4	A	94	95	parallel
Strand 5	A	130	131	parallel
Strand 6	A	148	149	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	117	119	parallel
Strand 3	A	73	83	parallel
Strand 4	A	55	62	parallel
Strand 5	C	24	25	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	113	114	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	C	55	62	anti-parallel
Strand 3	C	73	83	parallel
Strand 4	C	117	119	parallel
Strand 5	C	136	137	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	C	55	62	anti-parallel
Strand 3	C	73	83	parallel
Strand 4	C	94	95	parallel
Strand 5	C	130	131	parallel
Strand 6	C	148	149	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	67	68	parallel
Strand 3	B	88	89	parallel
Strand 4	B	124	125	parallel
Strand 5	B	142	143	parallel
Strand 6	B	157	160	parallel
Strand 7	B	165	169	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	113	114	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	67	68	parallel
Strand 3	C	88	89	parallel
Strand 4	C	124	125	parallel
Strand 5	C	142	143	parallel
Strand 6	C	157	160	parallel
Strand 7	C	165	169	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	113	114	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	25	first strand
Strand 2	E	55	62	anti-parallel
Strand 3	E	73	83	parallel
Strand 4	E	117	119	parallel
Strand 5	E	136	137	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	25	first strand
Strand 2	E	55	62	anti-parallel
Strand 3	E	73	83	parallel
Strand 4	E	94	95	parallel
Strand 5	E	130	131	parallel
Strand 6	E	148	149	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	67	68	parallel
Strand 3	D	88	89	parallel
Strand 4	D	124	125	parallel
Strand 5	D	142	143	parallel
Strand 6	D	157	160	parallel
Strand 7	D	165	169	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	117	119	parallel
Strand 3	D	73	83	parallel
Strand 4	D	94	95	parallel
Strand 5	D	130	131	parallel
Strand 6	D	148	149	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	117	119	parallel
Strand 3	D	73	83	parallel
Strand 4	D	55	62	parallel
Strand 5	F	24	25	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	113	114	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	F	55	57	anti-parallel
Strand 3	F	73	75	parallel
Strand 4	F	94	95	parallel
Strand 5	F	130	131	parallel
Strand 6	F	148	149	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	67	68	parallel
Strand 3	E	88	89	parallel
Strand 4	E	124	125	parallel
Strand 5	E	142	143	parallel
Strand 6	E	157	160	parallel
Strand 7	E	165	169	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	113	114	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	67	68	parallel
Strand 3	F	88	89	parallel
Strand 4	F	124	125	parallel
Strand 5	F	142	143	parallel
Strand 6	F	157	160	parallel
Strand 7	F	165	169	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	62	first strand
Strand 2	F	81	83	parallel
Strand 3	F	117	119	parallel
Strand 4	F	136	137	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	113	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VR7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VR7