Analysis of interatomic Contacts of Structural Units in PDB entry:
8VRF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VRF entry

There are 2 chains in PDB entry 8VRF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 2THR 463
A
 ALA 2THR 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8VRF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
23 39Right-handed alpha
Helix 2
AA2
B
84 88Right-handed 310
Helix 3
AA3
B
89 116Right-handed alpha
Helix 4
AA4
B
128 143Right-handed alpha
Helix 5
AA5
B
157 168Right-handed alpha
Helix 6
AA6
B
177 184Right-handed alpha
Helix 7
AA7
B
201 212Right-handed alpha
Helix 8
AA8
B
216 218Right-handed 310
Helix 9
AA9
B
239 245Right-handed alpha
Helix 10
AB1
B
261 265Right-handed 310
Helix 11
AB2
B
275 279Right-handed 310
Helix 12
AB3
B
290 293Right-handed 310
Helix 13
AB4
B
294 306Right-handed alpha
Helix 14
AB5
B
307 309Right-handed 310
Helix 15
AB6
B
321 334Right-handed alpha
Helix 16
AB7
B
348 359Right-handed alpha
Helix 17
AB8
B
372 381Right-handed alpha
Helix 18
AB9
B
391 396Right-handed 310
Helix 19
AC1
B
409 428Right-handed alpha
Helix 20
AC2
B
428 446Right-handed alpha
Helix 21
AC3
B
446 462Right-handed alpha
Helix 22
AC4
A
23 38Right-handed alpha
Helix 23
AC5
A
84 88Right-handed 310
Helix 24
AC6
A
89 116Right-handed alpha
Helix 25
AC7
A
128 143Right-handed alpha
Helix 26
AC8
A
157 168Right-handed alpha
Helix 27
AC9
A
177 184Right-handed alpha
Helix 28
AD1
A
201 212Right-handed alpha
Helix 29
AD2
A
216 218Right-handed 310
Helix 30
AD3
A
239 244Right-handed alpha
Helix 31
AD4
A
256 260Right-handed 310
Helix 32
AD5
A
261 265Right-handed 310
Helix 33
AD6
A
275 279Right-handed 310
Helix 34
AD7
A
290 293Right-handed 310
Helix 35
AD8
A
294 306Right-handed alpha
Helix 36
AD9
A
321 334Right-handed alpha
Helix 37
AE1
A
348 359Right-handed alpha
Helix 38
AE2
A
372 381Right-handed alpha
Helix 39
AE3
A
392 397Right-handed alpha
Helix 40
AE4
A
409 427Right-handed alpha
Helix 41
AE5
A
428 446Right-handed alpha
Helix 42
AE6
A
446 462Right-handed alpha
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There are 4 sheets in PDB entry 8VRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
42 50parallel
Strand 3
B
5 10parallel
Strand 4
B
121 125parallel
Strand 5
B
151 155parallel
Strand 6
B
196 199parallel
Strand 7
B
220 222parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 345first strand
Strand 2
B
312 317parallel
Strand 3
B
281 286parallel
Strand 4
B
361 363parallel
Strand 5
B
385 388parallel
Strand 6
B
402 405parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
42 50parallel
Strand 3
A
5 10parallel
Strand 4
A
121 125parallel
Strand 5
A
151 155parallel
Strand 6
A
196 199parallel
Strand 7
A
220 222parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
312 317parallel
Strand 3
A
281 286parallel
Strand 4
A
361 363parallel
Strand 5
A
385 388parallel
Strand 6
A
402 405parallel
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