Analysis of interatomic Contacts of Structural Units in PDB entry:
8VRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VRI entry

There are 30 chains in PDB entry 8VRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2PHE 27
A
 ASP 29GLY 75
A
 LYS 77THR 82
A
 ALA 84PHE 107
A
 ASN 109SER 114
A
 GLN 116HIS 170
B
 VAL 2PHE 27
B
 ASP 29GLY 75
B
 LYS 77THR 82
B
 ALA 84PHE 107
B
 ASN 109SER 114
B
 GLN 116HIS 170
C
 MET 1PHE 27
C
 ASP 29GLY 75
C
 LYS 77THR 82
C
 ALA 84PHE 107
C
 ASN 109SER 114
C
 GLN 116GLU 164
D
 MET 1PHE 27
D
 ASP 29GLY 75
D
 LYS 77THR 82
D
 ALA 84PHE 107
D
 ASN 109SER 114
D
 GLN 116GLU 164
E
 MET 1PHE 27
E
 ASP 29GLY 75
E
 LYS 77THR 82
E
 ALA 84PHE 107
E
 ASN 109SER 114
E
 GLN 116SER 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8VRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 33Right-handed alpha
Helix 2
AA2
A
71 75Right-handed 310
Helix 3
AA3
A
105 109Right-handed 310
Helix 4
AA4
A
129 138Right-handed alpha
Helix 5
AA5
B
20 33Right-handed alpha
Helix 6
AA6
B
71 75Right-handed 310
Helix 7
AA7
B
105 109Right-handed 310
Helix 8
AA8
B
129 138Right-handed alpha
Helix 9
AA9
C
20 33Right-handed alpha
Helix 10
AB1
C
71 75Right-handed 310
Helix 11
AB2
C
105 109Right-handed 310
Helix 12
AB3
C
129 138Right-handed alpha
Helix 13
AB4
D
20 34Right-handed alpha
Helix 14
AB5
D
71 75Right-handed 310
Helix 15
AB6
D
105 109Right-handed 310
Helix 16
AB7
D
129 138Right-handed alpha
Helix 17
AB8
E
20 33Right-handed alpha
Helix 18
AB9
E
71 75Right-handed 310
Helix 19
AC1
E
105 109Right-handed 310
Helix 20
AC2
E
129 137Right-handed alpha
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There are 14 sheets in PDB entry 8VRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 169first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
9 15anti-parallel
Strand 4
A
122 128anti-parallel
Strand 5
A
82 85anti-parallel
Strand 6
A
98 101anti-parallel
Strand 7
A
49 52anti-parallel
Strand 8
A
39 45anti-parallel
Strand 9
A
156 169anti-parallel
Strand 10
B
156 168parallel
Strand 11
B
39 45anti-parallel
Strand 12
B
49 52anti-parallel
Strand 13
B
98 101anti-parallel
Strand 14
B
82 85anti-parallel
Strand 15
B
122 128anti-parallel
Strand 16
B
9 15anti-parallel
Strand 17
B
2 6anti-parallel
Strand 18
B
156 168anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
60 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
147 151anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
60 61anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
147 151anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
9 15anti-parallel
Strand 3
C
122 128anti-parallel
Strand 4
C
82 85anti-parallel
Strand 5
C
98 101anti-parallel
Strand 6
C
49 52anti-parallel
Strand 7
C
39 45anti-parallel
Strand 8
C
156 162anti-parallel
Strand 9
C
2 6anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 56first strand
Strand 2
C
60 61anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
141 144first strand
Strand 2
C
147 151anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 40first strand
Strand 2
D
156 162anti-parallel
Strand 3
D
2 6anti-parallel
Strand 4
D
9 15anti-parallel
Strand 5
D
122 128anti-parallel
Strand 6
D
82 85anti-parallel
Strand 7
D
98 101anti-parallel
Strand 8
D
49 52anti-parallel
Strand 9
D
43 45anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 56first strand
Strand 2
D
60 61anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 144first strand
Strand 2
D
147 151anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 40first strand
Strand 2
E
156 162anti-parallel
Strand 3
E
2 6anti-parallel
Strand 4
E
9 15anti-parallel
Strand 5
E
122 128anti-parallel
Strand 6
E
82 85anti-parallel
Strand 7
E
98 101anti-parallel
Strand 8
E
49 52anti-parallel
Strand 9
E
43 45anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 56first strand
Strand 2
E
60 61anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
141 144first strand
Strand 2
E
147 151anti-parallel
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