Analysis of interatomic Contacts of Structural Units in PDB entry:
8VRL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VRL entry

There are 32 chains in PDB entry 8VRL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	ALA 2	GLY 60
3	ALA 2	ALA 24
4	TYR 41	TYR 466
B	G 1	C 118
C	GLY 2	LYS 276
D	ALA 2	GLY 215
E	THR 2	LYS 210
G	SER 2	THR 177
H	MET 1	GLN 151
K	PRO 2	GLN 147
L	MET 1	LEU 122
M	VAL 3	LEU 147
N	MET 1	GLU 136
O	PRO 2	LYS 119
P	ALA 2	PHE 127
Q	MET 1	ARG 113
R	ALA 2	SER 125
S	THR 3	ILE 102
T	GLU 6	PRO 119
U	ALA 2	ALA 98
V	MET 1	ILE 105
W	THR 4	ALA 195
X	SER 8	PRO 86
Y	ALA 2	ALA 64
Z	GLY 4	GLY 67
b	ALA 2	ASP 55
c	ASP 6	SER 54
d	ALA 2	ALA 47
e	PRO 2	GLY 64
f	MET 1	GLY 37
g	MET 1	LYS 48
A	A 2	C 3120

There are 94 helices in PDB entry 8VRL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	16	27	Right-handed alpha
Helix 2	AA2	2	40	50	Right-handed alpha
Helix 3	AA3	3	3	10	Right-handed alpha
Helix 4	AA4	4	59	78	Right-handed alpha
Helix 5	AA5	4	99	114	Right-handed alpha
Helix 6	AA6	4	125	137	Right-handed alpha
Helix 7	AA7	4	143	154	Right-handed alpha
Helix 8	AA8	4	157	171	Right-handed alpha
Helix 9	AA9	4	206	227	Right-handed alpha
Helix 10	AB1	4	228	237	Right-handed alpha
Helix 11	AB2	4	258	266	Right-handed alpha
Helix 12	AB3	4	311	314	Right-handed 310
Helix 13	AB4	4	315	324	Right-handed alpha
Helix 14	AB5	4	339	357	Right-handed alpha
Helix 15	AB6	4	379	384	Right-handed alpha
Helix 16	AB7	4	400	407	Right-handed alpha
Helix 17	AB8	C	10	14	Right-handed 310
Helix 18	AB9	C	134	136	Right-handed 310
Helix 19	AC1	C	208	216	Right-handed alpha
Helix 20	AC2	C	262	266	Right-handed 310
Helix 21	AC3	D	58	62	Right-handed 310
Helix 22	AC4	D	63	74	Right-handed alpha
Helix 23	AC5	D	102	106	Right-handed 310
Helix 24	AC6	D	125	130	Right-handed alpha
Helix 25	AC7	E	21	26	Right-handed alpha
Helix 26	AC8	E	30	45	Right-handed alpha
Helix 27	AC9	E	103	121	Right-handed alpha
Helix 28	AD1	E	137	149	Right-handed alpha
Helix 29	AD2	E	162	170	Right-handed alpha
Helix 30	AD3	E	179	183	Right-handed 310
Helix 31	AD4	E	184	191	Right-handed alpha
Helix 32	AD5	E	198	208	Right-handed alpha
Helix 33	AD6	G	3	7	Right-handed 310
Helix 34	AD7	G	59	79	Right-handed alpha
Helix 35	AD8	G	138	151	Right-handed alpha
Helix 36	AD9	H	22	29	Right-handed alpha
Helix 37	AE1	H	30	34	Right-handed 310
Helix 38	AE2	H	47	59	Right-handed alpha
Helix 39	AE3	H	64	73	Right-handed alpha
Helix 40	AE4	K	24	38	Right-handed alpha
Helix 41	AE5	K	67	72	Right-handed alpha
Helix 42	AE6	K	89	96	Right-handed alpha
Helix 43	AE7	K	96	108	Right-handed alpha
Helix 44	AE8	K	114	119	Right-handed alpha
Helix 45	AE9	L	104	109	Right-handed alpha
Helix 46	AF1	L	111	118	Right-handed alpha
Helix 47	AF2	M	39	43	Right-handed 310
Helix 48	AF3	M	56	61	Right-handed alpha
Helix 49	AF4	M	80	86	Right-handed alpha
Helix 50	AF5	M	94	102	Right-handed alpha
Helix 51	AF6	M	130	140	Right-handed alpha
Helix 52	AF7	N	44	58	Right-handed alpha
Helix 53	AF8	N	110	123	Right-handed alpha
Helix 54	AF9	O	13	32	Right-handed alpha
Helix 55	AG1	O	38	57	Right-handed alpha
Helix 56	AG2	O	59	67	Right-handed alpha
Helix 57	AG3	O	72	82	Right-handed alpha
Helix 58	AG4	O	82	87	Right-handed alpha
Helix 59	AG5	P	9	27	Right-handed alpha
Helix 60	AG6	P	83	92	Right-handed alpha
Helix 61	AG7	P	113	124	Right-handed alpha
Helix 62	AG8	Q	4	12	Right-handed alpha
Helix 63	AG9	Q	96	100	Right-handed 310
Helix 64	AH1	Q	104	108	Right-handed 310
Helix 65	AH2	R	11	21	Right-handed alpha
Helix 66	AH3	R	31	72	Right-handed alpha
Helix 67	AH4	R	75	87	Right-handed alpha
Helix 68	AH5	R	91	102	Right-handed alpha
Helix 69	AH6	R	102	117	Right-handed alpha
Helix 70	AH7	S	51	56	Right-handed alpha
Helix 71	AH8	T	20	29	Right-handed alpha
Helix 72	AH9	T	35	46	Right-handed alpha
Helix 73	AI1	T	50	68	Right-handed alpha
Helix 74	AI2	T	96	98	Right-handed 310
Helix 75	AI3	U	6	9	Right-handed 310
Helix 76	AI4	U	17	25	Right-handed alpha
Helix 77	AI5	U	38	51	Right-handed alpha
Helix 78	AI6	V	69	71	Right-handed 310
Helix 79	AI7	W	20	31	Right-handed alpha
Helix 80	AI8	W	51	62	Right-handed alpha
Helix 81	AI9	Y	53	58	Right-handed alpha
Helix 82	AJ1	Z	6	11	Right-handed alpha
Helix 83	AJ2	Z	14	39	Right-handed alpha
Helix 84	AJ3	Z	45	67	Right-handed alpha
Helix 85	AJ4	b	9	18	Right-handed alpha
Helix 86	AJ5	b	43	50	Right-handed alpha
Helix 87	AJ6	d	11	19	Right-handed alpha
Helix 88	AJ7	d	20	25	Right-handed alpha
Helix 89	AJ8	d	27	41	Right-handed alpha
Helix 90	AJ9	e	7	12	Right-handed alpha
Helix 91	AK1	e	37	44	Right-handed alpha
Helix 92	AK2	e	52	54	Right-handed 310
Helix 93	AK3	e	55	64	Right-handed alpha
Helix 94	AK4	f	29	32	Right-handed 310

There are 46 sheets in PDB entry 8VRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	34	38	first strand
Strand 2	2	3	8	anti-parallel
Strand 3	2	54	57	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	84	88	first strand
Strand 2	4	49	55	parallel
Strand 3	4	117	120	parallel
Strand 4	4	139	142	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	249	251	first strand
Strand 2	4	328	333	parallel
Strand 3	4	364	369	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	284	285	first strand
Strand 2	4	297	298	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	418	420	first strand
Strand 2	4	451	453	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	62	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	106	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	141	143	anti-parallel
Strand 4	C	163	168	anti-parallel
Strand 5	C	172	176	anti-parallel
Strand 6	C	182	186	anti-parallel
Strand 7	C	268	270	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	153	155	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	17	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	191	195	anti-parallel
Strand 4	D	174	186	anti-parallel
Strand 5	D	111	117	anti-parallel
Strand 6	D	205	210	anti-parallel
Strand 7	D	5	17	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	85	first strand
Strand 2	D	49	54	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	100	101	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	168	171	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	19	first strand
Strand 2	E	4	8	anti-parallel
Strand 3	E	124	127	parallel
Strand 4	E	193	197	parallel
Strand 5	E	154	157	parallel
Strand 6	E	175	178	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	28	first strand
Strand 2	G	31	32	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	128	first strand
Strand 2	G	131	136	anti-parallel
Strand 3	G	84	91	anti-parallel
Strand 4	G	162	164	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	99	first strand
Strand 2	G	103	107	anti-parallel
Strand 3	G	114	117	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	36	38	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	132	first strand
Strand 2	H	144	147	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	122	124	first strand
Strand 2	K	53	57	parallel
Strand 3	K	15	19	parallel
Strand 4	K	138	139	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	73	77	first strand
Strand 2	K	84	88	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	10	first strand
Strand 2	L	16	24	anti-parallel
Strand 3	L	38	46	anti-parallel
Strand 4	L	57	64	anti-parallel
Strand 5	L	83	87	anti-parallel
Strand 6	L	7	10	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	70	first strand
Strand 2	L	76	78	anti-parallel
Strand 3	Q	67	74	anti-parallel
Strand 4	Q	57	64	anti-parallel
Strand 5	Q	40	46	anti-parallel
Strand 6	Q	24	29	anti-parallel
Strand 7	Q	80	87	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	76	79	first strand
Strand 2	M	110	113	parallel
Strand 3	M	128	129	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	123	126	first strand
Strand 2	M	143	146	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	66	first strand
Strand 2	N	102	107	anti-parallel
Strand 3	N	32	35	anti-parallel
Strand 4	N	130	133	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	43	first strand
Strand 2	N	90	97	anti-parallel
Strand 3	N	72	75	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	33	37	first strand
Strand 2	O	110	115	anti-parallel
Strand 3	O	95	100	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	12	17	first strand
Strand 2	S	4	9	anti-parallel
Strand 3	S	39	43	anti-parallel
Strand 4	S	48	49	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	21	25	first strand
Strand 2	S	94	101	anti-parallel
Strand 3	S	60	66	anti-parallel
Strand 4	S	34	37	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	73	79	first strand
Strand 2	S	84	90	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	9	17	first strand
Strand 2	T	100	116	anti-parallel
Strand 3	T	76	94	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	11	14	first strand
Strand 2	U	28	33	anti-parallel
Strand 3	U	79	85	anti-parallel
Strand 4	U	58	62	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	66	69	first strand
Strand 2	U	72	75	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	8	10	first strand
Strand 2	V	20	27	anti-parallel
Strand 3	V	32	35	anti-parallel
Strand 4	V	66	67	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	83	85	first strand
Strand 2	V	96	98	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	9	10	first strand
Strand 2	W	67	71	parallel
Strand 3	W	74	84	anti-parallel
Strand 4	W	94	99	anti-parallel
Strand 5	W	32	38	parallel
Strand 6	W	45	50	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	22	23	first strand
Strand 2	X	36	39	anti-parallel
Strand 3	X	59	61	anti-parallel
Strand 4	X	51	53	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	30	31	first strand
Strand 2	X	65	71	anti-parallel
Strand 3	X	76	81	anti-parallel
Strand 4	X	46	47	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	13	17	first strand
Strand 2	Y	25	29	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	33	38	first strand
Strand 2	Y	47	52	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	27	32	first strand
Strand 2	b	35	40	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	21	26	first strand
Strand 2	c	10	14	anti-parallel
Strand 3	c	47	53	anti-parallel
Strand 4	c	37	42	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	23	24	first strand
Strand 2	e	48	49	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	2	3	first strand
Strand 2	f	34	35	parallel
Strand 3	f	22	26	anti-parallel
Strand 4	f	15	19	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	14	15	first strand
Strand 2	g	33	34	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VRL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VRL