Analysis of interatomic Contacts of Structural Units in PDB entry:
8VRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VRQ entry

There are 2 chains in PDB entry 8VRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4GLY 264
B
 TYR 5GLY 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8VRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 93Right-handed alpha
Helix 2
AA2
A
104 107Right-handed 310
Helix 3
AA3
A
115 125Right-handed alpha
Helix 4
AA4
A
129 144Right-handed alpha
Helix 5
AA5
A
147 159Right-handed alpha
Helix 6
AA6
A
161 172Right-handed alpha
Helix 7
AA7
A
179 187Right-handed alpha
Helix 8
AA8
A
190 200Right-handed alpha
Helix 9
AA9
A
204 224Right-handed alpha
Helix 10
AB1
A
227 236Right-handed alpha
Helix 11
AB2
A
239 252Right-handed alpha
Helix 12
AB3
A
254 263Right-handed alpha
Helix 13
AB4
B
6 10Right-handed alpha
Helix 14
AB5
B
77 93Right-handed alpha
Helix 15
AB6
B
104 107Right-handed 310
Helix 16
AB7
B
115 125Right-handed alpha
Helix 17
AB8
B
129 144Right-handed alpha
Helix 18
AB9
B
146 159Right-handed alpha
Helix 19
AC1
B
161 172Right-handed alpha
Helix 20
AC2
B
179 188Right-handed alpha
Helix 21
AC3
B
190 200Right-handed alpha
Helix 22
AC4
B
204 224Right-handed alpha
Helix 23
AC5
B
227 236Right-handed alpha
Helix 24
AC6
B
239 252Right-handed alpha
Helix 25
AC7
B
254 264Right-handed alpha
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There are 4 sheets in PDB entry 8VRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
56 63anti-parallel
Strand 3
A
30 36anti-parallel
Strand 4
A
39 43anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
22 26anti-parallel
Strand 3
A
47 51anti-parallel
Strand 4
A
109 113anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 18first strand
Strand 2
B
56 63anti-parallel
Strand 3
B
30 36anti-parallel
Strand 4
B
39 43anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
22 26anti-parallel
Strand 3
B
47 51anti-parallel
Strand 4
B
109 113anti-parallel
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