Analysis of interatomic Contacts of Structural Units in PDB entry:
8VRS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VRS entry

There are 4 chains in PDB entry 8VRS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 0ASN 389
C
ASP 149SER 384
B
MET 0ASN 389
D
ASP 149SER 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8VRS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
90 97Right-handed alpha
Helix 6
AA6
A
131 142Right-handed alpha
Helix 7
AA7
A
153 156Right-handed 310
Helix 8
AA8
A
157 164Right-handed alpha
Helix 9
AA9
A
185 201Right-handed alpha
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
228 230Right-handed 310
Helix 12
AB3
A
231 238Right-handed alpha
Helix 13
AB4
A
272 283Right-handed alpha
Helix 14
AB5
A
286 297Right-handed alpha
Helix 15
AB6
A
304 312Right-handed alpha
Helix 16
AB7
A
314 327Right-handed alpha
Helix 17
AB8
A
335 353Right-handed alpha
Helix 18
AB9
A
356 370Right-handed alpha
Helix 19
AC1
C
233 237Right-handed 310
Helix 20
AC2
C
289 293Right-handed 310
Helix 21
AC3
C
348 352Right-handed 310
Helix 22
AC4
B
16 32Right-handed alpha
Helix 23
AC5
B
42 52Right-handed alpha
Helix 24
AC6
B
66 73Right-handed alpha
Helix 25
AC7
B
82 87Right-handed alpha
Helix 26
AC8
B
90 97Right-handed alpha
Helix 27
AC9
B
131 142Right-handed alpha
Helix 28
AD1
B
153 156Right-handed 310
Helix 29
AD2
B
157 164Right-handed alpha
Helix 30
AD3
B
185 201Right-handed alpha
Helix 31
AD4
B
209 219Right-handed alpha
Helix 32
AD5
B
228 230Right-handed 310
Helix 33
AD6
B
231 238Right-handed alpha
Helix 34
AD7
B
272 283Right-handed alpha
Helix 35
AD8
B
286 297Right-handed alpha
Helix 36
AD9
B
304 312Right-handed alpha
Helix 37
AE1
B
314 327Right-handed alpha
Helix 38
AE2
B
335 353Right-handed alpha
Helix 39
AE3
B
356 367Right-handed alpha
Helix 40
AE4
D
233 237Right-handed 310
Helix 41
AE5
D
289 293Right-handed 310
Helix 42
AE6
D
348 352Right-handed 310
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There are 22 sheets in PDB entry 8VRS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 38first strand
Strand 2
A
6 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
301 302anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 38first strand
Strand 2
A
6 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
328 329parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 99first strand
Strand 2
A
102 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
145 147first strand
Strand 2
A
222 227parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
242 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
167 172first strand
Strand 2
A
175 182anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
152 155first strand
Strand 2
C
167 173anti-parallel
Strand 3
C
224 229anti-parallel
Strand 4
C
216 221anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
158 162first strand
Strand 2
C
255 260parallel
Strand 3
C
238 244anti-parallel
Strand 4
C
187 192anti-parallel
Strand 5
C
199 203anti-parallel
Strand 6
C
207 208anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
158 162first strand
Strand 2
C
255 260parallel
Strand 3
C
238 244anti-parallel
Strand 4
C
250 251anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
264 268first strand
Strand 2
C
279 286anti-parallel
Strand 3
C
339 344anti-parallel
Strand 4
C
329 334anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
272 273first strand
Strand 2
C
378 382parallel
Strand 3
C
353 363anti-parallel
Strand 4
C
295 301anti-parallel
Strand 5
C
305 312anti-parallel
Strand 6
C
319 321anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
272 273first strand
Strand 2
C
378 382parallel
Strand 3
C
353 363anti-parallel
Strand 4
C
366 374anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
34 38first strand
Strand 2
B
6 10parallel
Strand 3
B
59 63parallel
Strand 4
B
258 266anti-parallel
Strand 5
B
106 111anti-parallel
Strand 6
B
301 302anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
34 38first strand
Strand 2
B
6 10parallel
Strand 3
B
59 63parallel
Strand 4
B
258 266anti-parallel
Strand 5
B
328 329parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
98 99first strand
Strand 2
B
102 103anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
145 147first strand
Strand 2
B
222 227parallel
Strand 3
B
114 118anti-parallel
Strand 4
B
242 245anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
167 172first strand
Strand 2
B
175 182anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
152 155first strand
Strand 2
D
167 173anti-parallel
Strand 3
D
224 229anti-parallel
Strand 4
D
216 221anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
158 162first strand
Strand 2
D
255 260parallel
Strand 3
D
238 244anti-parallel
Strand 4
D
187 192anti-parallel
Strand 5
D
199 203anti-parallel
Strand 6
D
207 208anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
158 162first strand
Strand 2
D
255 260parallel
Strand 3
D
238 244anti-parallel
Strand 4
D
250 251anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
264 268first strand
Strand 2
D
279 286anti-parallel
Strand 3
D
339 344anti-parallel
Strand 4
D
329 334anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
272 273first strand
Strand 2
D
378 382parallel
Strand 3
D
353 363anti-parallel
Strand 4
D
295 301anti-parallel
Strand 5
D
305 312anti-parallel
Strand 6
D
319 321anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
272 273first strand
Strand 2
D
378 382parallel
Strand 3
D
353 363anti-parallel
Strand 4
D
366 374anti-parallel
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