Analysis of interatomic Contacts of Structural Units in PDB entry:
8VS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VS8 entry

There are 32 chains in PDB entry 8VS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1VAL 211
B
 PRO 2PRO 208
C
 ASP 1CYS 214
D
 VAL 2PRO 213
E
 GLU 1PRO 213
F
 PRO 2PRO 208
G
 ASP 1CYS 214
H
 VAL 2PRO 213
I
 GLU 1SER 112
J
 PRO 2VAL 106
K
 ASP 1GLY 212
L
 VAL 2PRO 213
M
 GLU 1PRO 213
N
 PRO 2PRO 208
O
 ASP 1CYS 214
P
 VAL 2PRO 213
Q
 GLU 1THR 116
R
 PRO 2LEU 106
S
 ASP 1CYS 214
T
 VAL 2PRO 213
U
 GLU 1ARG 210
V
 PRO 2PRO 208
W
 ASP 1PHE 209
X
 VAL 2PRO 213
Y
 GLU 1SER 112
Z
 PRO 2VAL 106
a
 ASP 1CYS 214
b
 VAL 2PRO 213
c
 VAL 2VAL 111
d
 VAL 3GLY 101
e
 ASP 1CYS 214
f
 VAL 2PRO 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 8VS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
B
27 30Right-handed 310
Helix 4
AA4
B
79 83Right-handed 310
Helix 5
AA5
B
121 127Right-handed alpha
Helix 6
AA6
B
181 187Right-handed alpha
Helix 7
AA7
C
79 83Right-handed 310
Helix 8
AA8
C
121 126Right-handed alpha
Helix 9
AA9
C
183 188Right-handed alpha
Helix 10
AB1
D
83 87Right-handed 310
Helix 11
AB2
D
187 189Right-handed 310
Helix 12
AB3
D
201 204Right-handed 310
Helix 13
AB4
E
28 32Right-handed 310
Helix 14
AB5
E
83 87Right-handed 310
Helix 15
AB6
E
156 158Right-handed 310
Helix 16
AB7
F
27 30Right-handed 310
Helix 17
AB8
F
79 83Right-handed 310
Helix 18
AB9
F
121 127Right-handed alpha
Helix 19
AC1
F
181 188Right-handed alpha
Helix 20
AC2
G
79 83Right-handed 310
Helix 21
AC3
G
121 126Right-handed alpha
Helix 22
AC4
G
183 187Right-handed alpha
Helix 23
AC5
H
83 87Right-handed 310
Helix 24
AC6
H
156 158Right-handed 310
Helix 25
AC7
H
187 189Right-handed 310
Helix 26
AC8
H
201 204Right-handed 310
Helix 27
AC9
I
28 32Right-handed 310
Helix 28
AD1
I
83 87Right-handed 310
Helix 29
AD2
K
79 83Right-handed 310
Helix 30
AD3
K
121 126Right-handed alpha
Helix 31
AD4
K
183 188Right-handed alpha
Helix 32
AD5
L
83 87Right-handed 310
Helix 33
AD6
L
156 158Right-handed 310
Helix 34
AD7
L
187 189Right-handed 310
Helix 35
AD8
L
201 204Right-handed 310
Helix 36
AD9
M
28 32Right-handed 310
Helix 37
AE1
M
83 87Right-handed 310
Helix 38
AE2
M
156 158Right-handed 310
Helix 39
AE3
M
201 204Right-handed 310
Helix 40
AE4
N
79 83Right-handed 310
Helix 41
AE5
N
121 127Right-handed alpha
Helix 42
AE6
N
181 188Right-handed alpha
Helix 43
AE7
O
79 83Right-handed 310
Helix 44
AE8
O
121 127Right-handed alpha
Helix 45
AE9
O
183 187Right-handed alpha
Helix 46
AF1
P
61 64Right-handed 310
Helix 47
AF2
P
156 158Right-handed 310
Helix 48
AF3
P
187 189Right-handed 310
Helix 49
AF4
P
201 204Right-handed 310
Helix 50
AF5
Q
28 32Right-handed 310
Helix 51
AF6
Q
73 75Right-handed 310
Helix 52
AF7
Q
83 87Right-handed 310
Helix 53
AF8
R
27 30Right-handed 310
Helix 54
AF9
R
79 83Right-handed 310
Helix 55
AG1
S
79 83Right-handed 310
Helix 56
AG2
S
121 126Right-handed alpha
Helix 57
AG3
S
183 187Right-handed alpha
Helix 58
AG4
T
83 87Right-handed 310
Helix 59
AG5
T
156 158Right-handed 310
Helix 60
AG6
T
201 204Right-handed 310
Helix 61
AG7
U
28 32Right-handed 310
Helix 62
AG8
U
83 87Right-handed 310
Helix 63
AG9
U
200 204Right-handed 310
Helix 64
AH1
V
27 30Right-handed 310
Helix 65
AH2
V
79 83Right-handed 310
Helix 66
AH3
V
121 127Right-handed alpha
Helix 67
AH4
W
121 127Right-handed alpha
Helix 68
AH5
W
183 187Right-handed alpha
Helix 69
AH6
X
61 64Right-handed 310
Helix 70
AH7
X
83 87Right-handed 310
Helix 71
AH8
X
156 158Right-handed 310
Helix 72
AH9
X
187 189Right-handed 310
Helix 73
AI1
Y
28 32Right-handed 310
Helix 74
AI2
Y
83 87Right-handed 310
Helix 75
AI3
Z
27 30Right-handed 310
Helix 76
AI4
a
79 83Right-handed 310
Helix 77
AI5
a
124 127Right-handed 310
Helix 78
AI6
a
183 188Right-handed alpha
Helix 79
AI7
b
61 64Right-handed 310
Helix 80
AI8
b
83 87Right-handed 310
Helix 81
AI9
b
156 158Right-handed 310
Helix 82
AJ1
b
187 189Right-handed 310
Helix 83
AJ2
b
201 204Right-handed 310
Helix 84
AJ3
c
28 32Right-handed 310
Helix 85
AJ4
c
60 64Right-handed 310
Helix 86
AJ5
c
83 87Right-handed 310
Helix 87
AJ6
d
79 83Right-handed 310
Helix 88
AJ7
e
121 128Right-handed alpha
Helix 89
AJ8
e
183 187Right-handed alpha
Helix 90
AJ9
f
61 64Right-handed 310
Helix 91
AK1
f
83 87Right-handed 310
Helix 92
AK2
f
156 158Right-handed 310
Helix 93
AK3
f
201 204Right-handed 310
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