Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VSB entry

There are 3 chains in PDB entry 8VSB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	SER 389
B	LEU 1	SER 389
I	CYS 26	ASP 591

There are 16 helices in PDB entry 8VSB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	29	Right-handed alpha
Helix 2	AA2	A	43	56	Right-handed alpha
Helix 3	AA3	A	181	190	Right-handed alpha
Helix 4	AA4	A	280	287	Right-handed alpha
Helix 5	AA5	B	9	28	Right-handed alpha
Helix 6	AA6	B	43	52	Right-handed alpha
Helix 7	AA7	B	185	191	Right-handed alpha
Helix 8	AA8	B	301	305	Right-handed alpha
Helix 9	AA9	B	341	346	Right-handed alpha
Helix 10	AB1	I	65	71	Right-handed alpha
Helix 11	AB2	I	108	112	Right-handed 310
Helix 12	AB3	I	140	145	Right-handed alpha
Helix 13	AB4	I	333	338	Right-handed alpha
Helix 14	AB5	I	509	513	Right-handed 310
Helix 15	AB6	I	558	562	Right-handed 310
Helix 16	AB7	I	578	587	Right-handed alpha

There are 19 sheets in PDB entry 8VSB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	256	258	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	320	322	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	366	369	anti-parallel
Strand 3	A	372	375	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	386	388	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	363	first strand
Strand 2	A	378	383	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	86	first strand
Strand 2	B	254	259	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	198	201	anti-parallel
Strand 3	B	146	149	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	320	322	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	315	317	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	386	389	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	369	first strand
Strand 2	B	372	383	anti-parallel

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There are 18 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	28	first strand
Strand 2	I	32	34	anti-parallel
Strand 3	I	53	55	parallel
Strand 4	I	77	79	parallel
Strand 5	I	101	103	parallel
Strand 6	I	128	130	parallel
Strand 7	I	153	155	parallel
Strand 8	I	177	179	parallel
Strand 9	I	201	203	parallel
Strand 10	I	222	224	parallel
Strand 11	I	247	249	parallel
Strand 12	I	269	271	parallel
Strand 13	I	319	321	parallel
Strand 14	I	343	345	parallel
Strand 15	I	367	369	parallel
Strand 16	I	390	392	parallel
Strand 17	I	414	416	parallel
Strand 18	I	447	449	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	87	88	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	163	164	first strand
Strand 2	I	187	188	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	211	212	first strand
Strand 2	I	232	233	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	353	356	first strand
Strand 2	I	377	380	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	457	458	first strand
Strand 2	I	480	481	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	495	497	first strand
Strand 2	I	518	520	parallel
Strand 3	I	540	542	parallel
Strand 4	I	565	567	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VSB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSB