Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VSC entry

There are 3 chains in PDB entry 8VSC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	SER 361
B	LEU 1	SER 361
I	CYS 26	ASP 591

There are 24 helices in PDB entry 8VSC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	28	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	86	91	Right-handed alpha
Helix 4	AA4	A	108	115	Right-handed alpha
Helix 5	AA5	A	117	119	Right-handed 310
Helix 6	AA6	A	171	182	Right-handed alpha
Helix 7	AA7	A	235	240	Right-handed alpha
Helix 8	AA8	B	8	28	Right-handed alpha
Helix 9	AA9	B	45	57	Right-handed alpha
Helix 10	AB1	B	91	96	Right-handed alpha
Helix 11	AB2	B	108	115	Right-handed alpha
Helix 12	AB3	B	171	182	Right-handed alpha
Helix 13	AB4	B	235	239	Right-handed 310
Helix 14	AB5	B	313	318	Right-handed alpha
Helix 15	AB6	I	65	70	Right-handed alpha
Helix 16	AB7	I	91	96	Right-handed alpha
Helix 17	AB8	I	108	112	Right-handed 310
Helix 18	AB9	I	140	145	Right-handed alpha
Helix 19	AC1	I	331	338	Right-handed alpha
Helix 20	AC2	I	486	490	Right-handed 310
Helix 21	AC3	I	509	513	Right-handed 310
Helix 22	AC4	I	552	557	Right-handed alpha
Helix 23	AC5	I	558	562	Right-handed 310
Helix 24	AC6	I	579	585	Right-handed alpha

There are 13 sheets in PDB entry 8VSC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	121	130	anti-parallel
Strand 3	A	228	233	anti-parallel
Strand 4	A	77	83	anti-parallel
Strand 5	B	344	360	anti-parallel
Strand 6	B	327	341	anti-parallel
Strand 7	B	282	284	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	107	first strand
Strand 2	A	185	192	anti-parallel
Strand 3	A	137	144	anti-parallel
Strand 4	A	152	158	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	291	294	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	326	341	anti-parallel
Strand 3	A	344	361	anti-parallel
Strand 4	B	77	83	anti-parallel
Strand 5	B	228	233	anti-parallel
Strand 6	B	121	130	anti-parallel
Strand 7	B	165	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	107	first strand
Strand 2	B	185	192	anti-parallel
Strand 3	B	137	144	anti-parallel
Strand 4	B	150	158	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	292	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	287	288	anti-parallel

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There are 23 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	29	first strand
Strand 2	I	32	34	anti-parallel
Strand 3	I	53	55	parallel
Strand 4	I	77	79	parallel
Strand 5	I	101	103	parallel
Strand 6	I	128	130	parallel
Strand 7	I	153	155	parallel
Strand 8	I	177	179	parallel
Strand 9	I	201	203	parallel
Strand 10	I	222	224	parallel
Strand 11	I	247	249	parallel
Strand 12	I	269	271	parallel
Strand 13	I	319	321	parallel
Strand 14	I	343	345	parallel
Strand 15	I	367	369	parallel
Strand 16	I	390	392	parallel
Strand 17	I	414	416	parallel
Strand 18	I	447	449	parallel
Strand 19	I	470	472	parallel
Strand 20	I	495	497	parallel
Strand 21	I	518	520	parallel
Strand 22	I	540	542	parallel
Strand 23	I	565	567	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	87	88	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	163	164	first strand
Strand 2	I	187	188	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	211	212	first strand
Strand 2	I	232	233	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	353	354	first strand
Strand 2	I	377	378	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	457	458	first strand
Strand 2	I	480	481	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VSC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSC