Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VSE entry

There are 3 chains in PDB entry 8VSE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 224	SER 574
B	PRO 224	SER 574
C	GLY 1	ASN 324

There are 7 helices in PDB entry 8VSE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	225	230	Right-handed alpha
Helix 2	AA2	A	311	315	Right-handed 310
Helix 3	AA3	A	332	334	Right-handed 310
Helix 4	AA4	B	225	230	Right-handed alpha
Helix 5	AA5	C	59	63	Right-handed 310
Helix 6	AA6	C	136	139	Right-handed 310
Helix 7	AA7	C	300	304	Right-handed 310

There are 24 sheets in PDB entry 8VSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	245	250	anti-parallel
Strand 3	A	267	271	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	281	first strand
Strand 2	A	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	319	325	anti-parallel
Strand 3	A	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	336	342	anti-parallel
Strand 3	A	362	371	anti-parallel
Strand 4	A	375	384	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	399	first strand
Strand 2	A	406	411	anti-parallel
Strand 3	A	441	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	421	425	anti-parallel
Strand 3	A	452	458	anti-parallel
Strand 4	A	472	477	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	A	466	467	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	493	first strand
Strand 2	A	499	504	anti-parallel
Strand 3	A	536	539	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	532	first strand
Strand 2	A	516	521	anti-parallel
Strand 3	A	547	554	anti-parallel
Strand 4	A	564	569	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	267	271	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	281	first strand
Strand 2	B	291	296	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	308	first strand
Strand 2	B	319	325	anti-parallel
Strand 3	B	351	354	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	348	first strand
Strand 2	B	336	342	anti-parallel
Strand 3	B	362	371	anti-parallel
Strand 4	B	375	384	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	399	first strand
Strand 2	B	406	411	anti-parallel
Strand 3	B	441	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	436	first strand
Strand 2	B	419	425	anti-parallel
Strand 3	B	452	462	anti-parallel
Strand 4	B	466	468	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	436	first strand
Strand 2	B	419	425	anti-parallel
Strand 3	B	452	462	anti-parallel
Strand 4	B	472	477	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	493	first strand
Strand 2	B	499	502	anti-parallel
Strand 3	B	536	539	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	532	first strand
Strand 2	B	515	521	anti-parallel
Strand 3	B	547	555	anti-parallel
Strand 4	B	564	569	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	76	81	parallel
Strand 3	C	64	69	anti-parallel
Strand 4	C	24	27	anti-parallel
Strand 5	C	34	35	anti-parallel
Strand 6	C	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	53	55	anti-parallel
Strand 3	C	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	171	179	parallel
Strand 3	C	159	164	anti-parallel
Strand 4	C	119	122	anti-parallel
Strand 5	C	127	130	anti-parallel
Strand 6	C	133	134	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	111	first strand
Strand 2	C	147	150	anti-parallel
Strand 3	C	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	252	first strand
Strand 2	C	316	324	parallel
Strand 3	C	305	311	anti-parallel
Strand 4	C	268	272	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	293	296	anti-parallel
Strand 3	C	288	289	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VSE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSE