Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VSI entry

There are 2 chains in PDB entry 8VSI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13GLN 583
B
 LEU 10ASP 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8VSI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
23 58Right-handed alpha
Helix 3
AA3
A
63 110Right-handed alpha
Helix 4
AA4
A
111 119Right-handed alpha
Helix 5
AA5
A
119 141Right-handed alpha
Helix 6
AA6
A
141 163Right-handed alpha
Helix 7
AA7
A
163 184Right-handed alpha
Helix 8
AA8
A
191 212Right-handed alpha
Helix 9
AA9
A
212 220Right-handed alpha
Helix 10
AB1
A
226 258Right-handed alpha
Helix 11
AB2
A
259 277Right-handed alpha
Helix 12
AB3
A
281 292Right-handed alpha
Helix 13
AB4
A
293 295Right-handed 310
Helix 14
AB5
A
299 323Right-handed alpha
Helix 15
AB6
A
382 391Right-handed alpha
Helix 16
AB7
A
412 418Right-handed alpha
Helix 17
AB8
A
433 439Right-handed alpha
Helix 18
AB9
A
446 457Right-handed alpha
Helix 19
AC1
A
459 466Right-handed alpha
Helix 20
AC2
A
468 472Right-handed 310
Helix 21
AC3
A
482 497Right-handed alpha
Helix 22
AC4
A
512 527Right-handed alpha
Helix 23
AC5
A
561 569Right-handed alpha
Helix 24
AC6
A
570 583Right-handed alpha
Helix 25
AC7
B
11 24Right-handed alpha
Helix 26
AC8
B
26 50Right-handed alpha
Helix 27
AC9
B
50 58Right-handed alpha
Helix 28
AD1
B
62 88Right-handed alpha
Helix 29
AD2
B
88 93Right-handed alpha
Helix 30
AD3
B
94 114Right-handed alpha
Helix 31
AD4
B
115 121Right-handed alpha
Helix 32
AD5
B
123 132Right-handed alpha
Helix 33
AD6
B
132 140Right-handed alpha
Helix 34
AD7
B
141 167Right-handed alpha
Helix 35
AD8
B
167 176Right-handed alpha
Helix 36
AD9
B
176 216Right-handed alpha
Helix 37
AE1
B
216 224Right-handed alpha
Helix 38
AE2
B
228 279Right-handed alpha
Helix 39
AE3
B
283 296Right-handed alpha
Helix 40
AE4
B
297 303Right-handed alpha
Helix 41
AE5
B
303 326Right-handed alpha
Helix 42
AE6
B
383 392Right-handed alpha
Helix 43
AE7
B
408 412Right-handed 310
Helix 44
AE8
B
413 420Right-handed alpha
Helix 45
AE9
B
434 441Right-handed alpha
Helix 46
AF1
B
447 458Right-handed alpha
Helix 47
AF2
B
460 466Right-handed alpha
Helix 48
AF3
B
469 473Right-handed 310
Helix 49
AF4
B
476 480Right-handed 310
Helix 50
AF5
B
483 498Right-handed alpha
Helix 51
AF6
B
513 527Right-handed alpha
Helix 52
AF7
B
562 569Right-handed alpha
Helix 53
AF8
B
571 582Right-handed alpha
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There are 4 sheets in PDB entry 8VSI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 367first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
398 403anti-parallel
Strand 4
A
406 407anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
A
501 505parallel
Strand 3
A
531 535parallel
Strand 4
A
372 376parallel
Strand 5
A
547 552parallel
Strand 6
A
555 560anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 368first strand
Strand 2
B
344 350anti-parallel
Strand 3
B
399 403anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 424first strand
Strand 2
B
502 506parallel
Strand 3
B
532 536parallel
Strand 4
B
373 378parallel
Strand 5
B
548 553parallel
Strand 6
B
556 561anti-parallel
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