Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VSJ entry

There are 6 chains in PDB entry 8VSJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	ASP 179
B	ASP 181	SER 370
C	LYS 2	GLN 120
H	GLN 1	THR 110
L	ASP 1	LYS 107
P	SER 3	GLN 14

There are 12 helices in PDB entry 8VSJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	49	Right-handed 310
Helix 2	AA2	A	53	56	Right-handed 310
Helix 3	AA3	A	57	75	Right-handed alpha
Helix 4	AA4	B	233	241	Right-handed alpha
Helix 5	AA5	B	243	252	Right-handed alpha
Helix 6	AA6	B	252	257	Right-handed alpha
Helix 7	AA7	B	257	266	Right-handed alpha
Helix 8	AA8	C	25	35	Right-handed alpha
Helix 9	AA9	C	41	66	Right-handed alpha
Helix 10	AB1	C	68	89	Right-handed alpha
Helix 11	AB2	C	92	120	Right-handed alpha
Helix 12	AB3	H	83	87	Right-handed 310

There are 13 sheets in PDB entry 8VSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	27	33	anti-parallel
Strand 3	A	17	24	anti-parallel
Strand 4	A	2	13	anti-parallel
Strand 5	B	186	197	anti-parallel
Strand 6	B	202	211	anti-parallel
Strand 7	B	214	220	anti-parallel
Strand 8	B	225	228	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	91	first strand
Strand 2	A	101	110	anti-parallel
Strand 3	A	143	151	anti-parallel
Strand 4	A	131	132	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	118	121	anti-parallel
Strand 3	A	159	163	anti-parallel
Strand 4	A	172	176	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	283	first strand
Strand 2	B	292	301	anti-parallel
Strand 3	B	334	340	anti-parallel
Strand 4	B	321	323	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	283	first strand
Strand 2	B	292	301	anti-parallel
Strand 3	B	334	340	anti-parallel
Strand 4	B	327	328	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	308	312	anti-parallel
Strand 3	B	350	354	anti-parallel
Strand 4	B	363	367	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	88	96	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	88	96	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	44	46	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VSJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSJ