Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VSP entry

There are 9 chains in PDB entry 8VSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	SER 221
B	SER 3	LYS 225
C	GLY 47	GLN 116
D	ASP 2	SER 221
E	SER 3	LYS 225
F	GLY 47	GLN 116
G	ASP 2	SER 221
H	SER 3	LYS 225
I	GLY 47	GLN 116

There are 27 helices in PDB entry 8VSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	52	Right-handed 310
Helix 2	AA2	A	57	79	Right-handed alpha
Helix 3	AA3	A	189	221	Right-handed alpha
Helix 4	AA4	B	54	64	Right-handed alpha
Helix 5	AA5	B	64	73	Right-handed alpha
Helix 6	AA6	B	73	78	Right-handed alpha
Helix 7	AA7	B	78	89	Right-handed alpha
Helix 8	AA8	B	197	225	Right-handed alpha
Helix 9	AA9	C	48	96	Right-handed alpha
Helix 10	AB1	D	48	52	Right-handed 310
Helix 11	AB2	D	57	79	Right-handed alpha
Helix 12	AB3	D	189	221	Right-handed alpha
Helix 13	AB4	E	54	64	Right-handed alpha
Helix 14	AB5	E	64	73	Right-handed alpha
Helix 15	AB6	E	73	78	Right-handed alpha
Helix 16	AB7	E	78	89	Right-handed alpha
Helix 17	AB8	E	197	225	Right-handed alpha
Helix 18	AB9	F	48	96	Right-handed alpha
Helix 19	AC1	G	48	52	Right-handed 310
Helix 20	AC2	G	57	79	Right-handed alpha
Helix 21	AC3	G	189	221	Right-handed alpha
Helix 22	AC4	H	54	64	Right-handed alpha
Helix 23	AC5	H	64	73	Right-handed alpha
Helix 24	AC6	H	73	78	Right-handed alpha
Helix 25	AC7	H	78	89	Right-handed alpha
Helix 26	AC8	H	197	225	Right-handed alpha
Helix 27	AC9	I	48	96	Right-handed alpha

There are 18 sheets in PDB entry 8VSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	22	29	anti-parallel
Strand 4	A	7	17	anti-parallel
Strand 5	B	8	18	anti-parallel
Strand 6	B	23	32	anti-parallel
Strand 7	B	36	41	anti-parallel
Strand 8	B	48	49	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	105	114	anti-parallel
Strand 3	A	147	155	anti-parallel
Strand 4	A	134	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	105	114	anti-parallel
Strand 3	A	147	155	anti-parallel
Strand 4	A	140	141	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	120	125	anti-parallel
Strand 3	A	163	168	anti-parallel
Strand 4	A	176	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	115	122	anti-parallel
Strand 3	B	155	161	anti-parallel
Strand 4	B	142	149	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	171	176	anti-parallel
Strand 3	B	184	188	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	22	29	anti-parallel
Strand 4	D	7	17	anti-parallel
Strand 5	E	8	18	anti-parallel
Strand 6	E	23	32	anti-parallel
Strand 7	E	36	41	anti-parallel
Strand 8	E	48	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	105	114	anti-parallel
Strand 3	D	147	155	anti-parallel
Strand 4	D	134	136	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	105	114	anti-parallel
Strand 3	D	147	155	anti-parallel
Strand 4	D	140	141	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	120	125	anti-parallel
Strand 3	D	163	168	anti-parallel
Strand 4	D	176	180	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	102	first strand
Strand 2	E	115	122	anti-parallel
Strand 3	E	155	161	anti-parallel
Strand 4	E	142	149	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	133	first strand
Strand 2	E	171	176	anti-parallel
Strand 3	E	184	188	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	32	38	anti-parallel
Strand 3	G	22	29	anti-parallel
Strand 4	G	7	17	anti-parallel
Strand 5	H	8	18	anti-parallel
Strand 6	H	23	32	anti-parallel
Strand 7	H	36	41	anti-parallel
Strand 8	H	48	49	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	95	first strand
Strand 2	G	105	114	anti-parallel
Strand 3	G	147	155	anti-parallel
Strand 4	G	134	136	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	95	first strand
Strand 2	G	105	114	anti-parallel
Strand 3	G	147	155	anti-parallel
Strand 4	G	140	141	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	130	first strand
Strand 2	G	120	125	anti-parallel
Strand 3	G	163	168	anti-parallel
Strand 4	G	176	180	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	102	first strand
Strand 2	H	115	122	anti-parallel
Strand 3	H	155	161	anti-parallel
Strand 4	H	142	149	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	133	first strand
Strand 2	H	171	176	anti-parallel
Strand 3	H	184	188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSP