Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VSU entry

There are 3 chains in PDB entry 8VSU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 9PRO 336
C
 LYS 41ALA 347
B
 SER 60THR 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8VSU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 27Right-handed alpha
Helix 2
AA2
A
32 56Right-handed alpha
Helix 3
AA3
A
63 77Right-handed alpha
Helix 4
AA4
A
78 86Right-handed alpha
Helix 5
AA5
A
87 90Right-handed 310
Helix 6
AA6
A
91 107Right-handed alpha
Helix 7
AA7
A
114 121Right-handed alpha
Helix 8
AA8
A
124 133Right-handed alpha
Helix 9
AA9
A
134 136Right-handed 310
Helix 10
AB1
A
139 151Right-handed alpha
Helix 11
AB2
A
153 162Right-handed alpha
Helix 12
AB3
A
163 167Right-handed 310
Helix 13
AB4
A
168 173Right-handed alpha
Helix 14
AB5
A
177 194Right-handed alpha
Helix 15
AB6
A
195 206Right-handed alpha
Helix 16
AB7
A
206 219Right-handed alpha
Helix 17
AB8
A
222 239Right-handed alpha
Helix 18
AB9
A
242 250Right-handed alpha
Helix 19
AC1
A
252 263Right-handed alpha
Helix 20
AC2
A
267 284Right-handed alpha
Helix 21
AC3
A
288 298Right-handed alpha
Helix 22
AC4
A
298 307Right-handed alpha
Helix 23
AC5
A
316 332Right-handed alpha
Helix 24
AC6
C
82 86Right-handed alpha
Helix 25
AC7
C
90 103Right-handed alpha
Helix 26
AC8
C
136 141Right-handed alpha
Helix 27
AC9
C
149 170Right-handed alpha
Helix 28
AD1
C
178 180Right-handed 310
Helix 29
AD2
C
194 198Right-handed 310
Helix 30
AD3
C
216 220Right-handed 310
Helix 31
AD4
C
221 226Right-handed alpha
Helix 32
AD5
C
233 251Right-handed alpha
Helix 33
AD6
C
259 269Right-handed alpha
Helix 34
AD7
C
279 289Right-handed alpha
Helix 35
AD8
C
299 306Right-handed alpha
Helix 36
AD9
C
306 311Right-handed alpha
Helix 37
AE1
C
337 345Right-handed alpha
Helix 38
AE2
B
65 67Right-handed 310
Helix 39
AE3
B
105 107Right-handed 310
Helix 40
AE4
B
108 125Right-handed alpha
Helix 41
AE5
B
154 160Right-handed alpha
Helix 42
AE6
B
168 189Right-handed alpha
Helix 43
AE7
B
213 217Right-handed 310
Helix 44
AE8
B
237 244Right-handed 310
Helix 45
AE9
B
245 250Right-handed alpha
Helix 46
AF1
B
258 275Right-handed alpha
Helix 47
AF2
B
283 293Right-handed alpha
Helix 48
AF3
B
349 359Right-handed alpha
Helix 49
AF4
B
363 367Right-handed 310
Helix 50
AF5
B
369 374Right-handed alpha
Helix 51
AF6
B
375 382Right-handed 310
Helix 52
AF7
B
385 394Right-handed alpha
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There are 8 sheets in PDB entry 8VSU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
62 68anti-parallel
Strand 4
C
74 81anti-parallel
Strand 5
C
124 130anti-parallel
Strand 6
C
113 119anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
182 184anti-parallel
Strand 3
C
190 192anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 173first strand
Strand 2
C
199 200anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 210first strand
Strand 2
C
231 232anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 78first strand
Strand 2
B
83 90anti-parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
142 148anti-parallel
Strand 5
B
133 139anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
218 219anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
209 211anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
225 226anti-parallel
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