Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VSZ entry

There are 5 chains in PDB entry 8VSZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 45	PHE 440
B	THR 45	PHE 440
C	THR 45	PHE 440
D	THR 45	PHE 440
E	THR 45	PHE 440

There are 45 helices in PDB entry 8VSZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	194	197	Right-handed 310
Helix 2	AA2	A	201	205	Right-handed 310
Helix 3	AA3	A	241	249	Right-handed alpha
Helix 4	AA4	A	249	263	Right-handed alpha
Helix 5	AA5	A	264	266	Right-handed 310
Helix 6	AA6	A	270	296	Right-handed alpha
Helix 7	AA7	A	304	332	Right-handed alpha
Helix 8	AA8	A	415	420	Right-handed alpha
Helix 9	AA9	A	421	437	Right-handed alpha
Helix 10	AB1	B	194	197	Right-handed 310
Helix 11	AB2	B	201	205	Right-handed 310
Helix 12	AB3	B	241	249	Right-handed alpha
Helix 13	AB4	B	249	263	Right-handed alpha
Helix 14	AB5	B	264	266	Right-handed 310
Helix 15	AB6	B	270	296	Right-handed alpha
Helix 16	AB7	B	304	332	Right-handed alpha
Helix 17	AB8	B	415	420	Right-handed alpha
Helix 18	AB9	B	421	437	Right-handed alpha
Helix 19	AC1	C	194	197	Right-handed 310
Helix 20	AC2	C	201	205	Right-handed 310
Helix 21	AC3	C	241	249	Right-handed alpha
Helix 22	AC4	C	249	263	Right-handed alpha
Helix 23	AC5	C	264	266	Right-handed 310
Helix 24	AC6	C	270	296	Right-handed alpha
Helix 25	AC7	C	304	332	Right-handed alpha
Helix 26	AC8	C	415	420	Right-handed alpha
Helix 27	AC9	C	421	437	Right-handed alpha
Helix 28	AD1	D	194	197	Right-handed 310
Helix 29	AD2	D	201	205	Right-handed 310
Helix 30	AD3	D	241	249	Right-handed alpha
Helix 31	AD4	D	249	263	Right-handed alpha
Helix 32	AD5	D	264	266	Right-handed 310
Helix 33	AD6	D	270	296	Right-handed alpha
Helix 34	AD7	D	304	332	Right-handed alpha
Helix 35	AD8	D	415	420	Right-handed alpha
Helix 36	AD9	D	421	437	Right-handed alpha
Helix 37	AE1	E	194	197	Right-handed 310
Helix 38	AE2	E	201	205	Right-handed 310
Helix 39	AE3	E	241	249	Right-handed alpha
Helix 40	AE4	E	249	263	Right-handed alpha
Helix 41	AE5	E	264	266	Right-handed 310
Helix 42	AE6	E	270	296	Right-handed alpha
Helix 43	AE7	E	304	332	Right-handed alpha
Helix 44	AE8	E	415	420	Right-handed alpha
Helix 45	AE9	E	421	437	Right-handed alpha

There are 20 sheets in PDB entry 8VSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	138	142	anti-parallel
Strand 3	A	147	159	anti-parallel
Strand 4	A	81	93	anti-parallel
Strand 5	A	61	76	anti-parallel
Strand 6	A	188	192	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	130	first strand
Strand 2	A	147	159	anti-parallel
Strand 3	A	81	93	anti-parallel
Strand 4	A	61	76	anti-parallel
Strand 5	A	199	200	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	171	180	anti-parallel
Strand 3	A	231	239	anti-parallel
Strand 4	A	211	212	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	171	180	anti-parallel
Strand 3	A	231	239	anti-parallel
Strand 4	A	216	219	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	138	142	anti-parallel
Strand 3	B	147	159	anti-parallel
Strand 4	B	81	93	anti-parallel
Strand 5	B	61	76	anti-parallel
Strand 6	B	188	192	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	130	first strand
Strand 2	B	147	159	anti-parallel
Strand 3	B	81	93	anti-parallel
Strand 4	B	61	76	anti-parallel
Strand 5	B	199	200	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	171	180	anti-parallel
Strand 3	B	231	239	anti-parallel
Strand 4	B	211	212	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	171	180	anti-parallel
Strand 3	B	231	239	anti-parallel
Strand 4	B	216	219	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	138	142	anti-parallel
Strand 3	C	147	159	anti-parallel
Strand 4	C	81	93	anti-parallel
Strand 5	C	61	76	anti-parallel
Strand 6	C	188	192	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	147	159	anti-parallel
Strand 3	C	81	93	anti-parallel
Strand 4	C	61	76	anti-parallel
Strand 5	C	199	200	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	171	180	anti-parallel
Strand 3	C	231	239	anti-parallel
Strand 4	C	211	212	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	171	180	anti-parallel
Strand 3	C	231	239	anti-parallel
Strand 4	C	216	219	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	138	142	anti-parallel
Strand 3	D	147	159	anti-parallel
Strand 4	D	81	93	anti-parallel
Strand 5	D	61	76	anti-parallel
Strand 6	D	188	192	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	130	first strand
Strand 2	D	147	159	anti-parallel
Strand 3	D	81	93	anti-parallel
Strand 4	D	61	76	anti-parallel
Strand 5	D	199	200	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	171	180	anti-parallel
Strand 3	D	231	239	anti-parallel
Strand 4	D	211	212	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	171	180	anti-parallel
Strand 3	D	231	239	anti-parallel
Strand 4	D	216	219	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand
Strand 2	E	138	142	anti-parallel
Strand 3	E	147	159	anti-parallel
Strand 4	E	81	93	anti-parallel
Strand 5	E	61	76	anti-parallel
Strand 6	E	188	192	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	130	first strand
Strand 2	E	147	159	anti-parallel
Strand 3	E	81	93	anti-parallel
Strand 4	E	61	76	anti-parallel
Strand 5	E	199	200	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	122	first strand
Strand 2	E	171	180	anti-parallel
Strand 3	E	231	239	anti-parallel
Strand 4	E	211	212	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	122	first strand
Strand 2	E	171	180	anti-parallel
Strand 3	E	231	239	anti-parallel
Strand 4	E	216	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VSZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VSZ