Analysis of interatomic Contacts of Structural Units in PDB entry:
8VT0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VT0 entry

There are 4 chains in PDB entry 8VT0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 2	LYS 1023
B	MET 2	LYS 1023
C	MET 2	LYS 1023
D	MET 2	LYS 1023

There are 80 helices in PDB entry 8VT0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	40	45	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	131	135	Right-handed 310
Helix 5	AA5	A	192	198	Right-handed 310
Helix 6	AA6	A	369	381	Right-handed alpha
Helix 7	AA7	A	397	402	Right-handed alpha
Helix 8	AA8	A	424	429	Right-handed alpha
Helix 9	AA9	A	432	437	Right-handed alpha
Helix 10	AB1	A	440	445	Right-handed alpha
Helix 11	AB2	A	466	471	Right-handed alpha
Helix 12	AB3	A	471	479	Right-handed alpha
Helix 13	AB4	A	548	550	Right-handed 310
Helix 14	AB5	A	551	559	Right-handed alpha
Helix 15	AB6	A	616	621	Right-handed alpha
Helix 16	AB7	A	789	793	Right-handed 310
Helix 17	AB8	A	805	814	Right-handed alpha
Helix 18	AB9	A	923	925	Right-handed 310
Helix 19	AC1	A	964	970	Right-handed alpha
Helix 20	AC2	A	1004	1008	Right-handed 310
Helix 21	AC3	B	6	12	Right-handed alpha
Helix 22	AC4	B	40	45	Right-handed alpha
Helix 23	AC5	B	70	74	Right-handed 310
Helix 24	AC6	B	131	135	Right-handed 310
Helix 25	AC7	B	192	198	Right-handed 310
Helix 26	AC8	B	369	381	Right-handed alpha
Helix 27	AC9	B	397	402	Right-handed alpha
Helix 28	AD1	B	424	429	Right-handed alpha
Helix 29	AD2	B	432	437	Right-handed alpha
Helix 30	AD3	B	440	445	Right-handed alpha
Helix 31	AD4	B	466	471	Right-handed alpha
Helix 32	AD5	B	471	479	Right-handed alpha
Helix 33	AD6	B	548	550	Right-handed 310
Helix 34	AD7	B	551	559	Right-handed alpha
Helix 35	AD8	B	616	621	Right-handed alpha
Helix 36	AD9	B	789	793	Right-handed 310
Helix 37	AE1	B	805	814	Right-handed alpha
Helix 38	AE2	B	923	925	Right-handed 310
Helix 39	AE3	B	964	970	Right-handed alpha
Helix 40	AE4	B	1004	1008	Right-handed 310
Helix 41	AE5	C	6	12	Right-handed alpha
Helix 42	AE6	C	40	45	Right-handed alpha
Helix 43	AE7	C	70	74	Right-handed 310
Helix 44	AE8	C	131	135	Right-handed 310
Helix 45	AE9	C	192	198	Right-handed 310
Helix 46	AF1	C	369	381	Right-handed alpha
Helix 47	AF2	C	397	402	Right-handed alpha
Helix 48	AF3	C	424	429	Right-handed alpha
Helix 49	AF4	C	432	437	Right-handed alpha
Helix 50	AF5	C	440	445	Right-handed alpha
Helix 51	AF6	C	466	471	Right-handed alpha
Helix 52	AF7	C	471	479	Right-handed alpha
Helix 53	AF8	C	548	550	Right-handed 310
Helix 54	AF9	C	551	559	Right-handed alpha
Helix 55	AG1	C	616	621	Right-handed alpha
Helix 56	AG2	C	789	793	Right-handed 310
Helix 57	AG3	C	805	814	Right-handed alpha
Helix 58	AG4	C	923	925	Right-handed 310
Helix 59	AG5	C	964	970	Right-handed alpha
Helix 60	AG6	C	1004	1008	Right-handed 310
Helix 61	AG7	D	6	12	Right-handed alpha
Helix 62	AG8	D	40	45	Right-handed alpha
Helix 63	AG9	D	70	74	Right-handed 310
Helix 64	AH1	D	131	135	Right-handed 310
Helix 65	AH2	D	192	198	Right-handed 310
Helix 66	AH3	D	369	381	Right-handed alpha
Helix 67	AH4	D	397	402	Right-handed alpha
Helix 68	AH5	D	424	429	Right-handed alpha
Helix 69	AH6	D	432	437	Right-handed alpha
Helix 70	AH7	D	440	445	Right-handed alpha
Helix 71	AH8	D	466	471	Right-handed alpha
Helix 72	AH9	D	471	479	Right-handed alpha
Helix 73	AI1	D	548	550	Right-handed 310
Helix 74	AI2	D	551	559	Right-handed alpha
Helix 75	AI3	D	616	621	Right-handed alpha
Helix 76	AI4	D	789	793	Right-handed 310
Helix 77	AI5	D	805	814	Right-handed alpha
Helix 78	AI6	D	923	925	Right-handed 310
Helix 79	AI7	D	964	970	Right-handed alpha
Helix 80	AI8	D	1004	1008	Right-handed 310

There are 52 sheets in PDB entry 8VT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	212	217	anti-parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	169	172	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	86	first strand
Strand 2	A	56	63	anti-parallel
Strand 3	A	120	128	anti-parallel
Strand 4	A	181	189	anti-parallel
Strand 5	A	149	154	anti-parallel
Strand 6	A	157	162	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	207	208	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	203	204	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	231	first strand
Strand 2	A	237	246	anti-parallel
Strand 3	A	288	296	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	273	first strand
Strand 2	A	255	262	anti-parallel
Strand 3	A	309	316	anti-parallel
Strand 4	A	322	330	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	342	344	anti-parallel
Strand 3	A	347	348	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	485	first strand
Strand 2	A	453	457	parallel
Strand 3	A	408	410	parallel
Strand 4	A	386	389	parallel
Strand 5	A	351	356	parallel
Strand 6	A	562	567	parallel
Strand 7	A	533	534	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	632	first strand
Strand 2	A	635	640	anti-parallel
Strand 3	A	677	681	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	669	first strand
Strand 2	A	651	658	anti-parallel
Strand 3	A	694	701	anti-parallel
Strand 4	A	714	721	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	742	first strand
Strand 2	A	746	751	anti-parallel
Strand 3	A	754	759	anti-parallel
Strand 4	A	765	770	anti-parallel
Strand 5	A	773	774	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	783	first strand
Strand 2	A	881	888	anti-parallel
Strand 3	A	982	990	anti-parallel
Strand 4	A	949	960	anti-parallel
Strand 5	A	1013	1022	anti-parallel
Strand 6	A	864	872	anti-parallel
Strand 7	A	847	858	anti-parallel
Strand 8	A	834	844	anti-parallel
Strand 9	A	819	829	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	783	first strand
Strand 2	A	881	888	anti-parallel
Strand 3	A	982	990	anti-parallel
Strand 4	A	949	960	anti-parallel
Strand 5	A	938	946	anti-parallel
Strand 6	A	894	901	anti-parallel
Strand 7	A	914	921	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	212	217	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	169	172	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	86	first strand
Strand 2	B	56	63	anti-parallel
Strand 3	B	120	128	anti-parallel
Strand 4	B	181	189	anti-parallel
Strand 5	B	149	154	anti-parallel
Strand 6	B	157	162	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	207	208	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	203	204	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	231	first strand
Strand 2	B	237	246	anti-parallel
Strand 3	B	288	296	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	273	first strand
Strand 2	B	255	262	anti-parallel
Strand 3	B	309	316	anti-parallel
Strand 4	B	322	330	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	342	344	anti-parallel
Strand 3	B	347	348	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	453	457	parallel
Strand 3	B	408	410	parallel
Strand 4	B	386	389	parallel
Strand 5	B	351	356	parallel
Strand 6	B	562	567	parallel
Strand 7	B	533	534	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	632	first strand
Strand 2	B	635	640	anti-parallel
Strand 3	B	677	681	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	669	first strand
Strand 2	B	651	658	anti-parallel
Strand 3	B	694	701	anti-parallel
Strand 4	B	714	721	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	739	742	first strand
Strand 2	B	746	751	anti-parallel
Strand 3	B	754	759	anti-parallel
Strand 4	B	765	770	anti-parallel
Strand 5	B	773	774	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	783	first strand
Strand 2	B	881	888	anti-parallel
Strand 3	B	982	990	anti-parallel
Strand 4	B	949	960	anti-parallel
Strand 5	B	1013	1022	anti-parallel
Strand 6	B	864	872	anti-parallel
Strand 7	B	847	858	anti-parallel
Strand 8	B	834	844	anti-parallel
Strand 9	B	819	829	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	783	first strand
Strand 2	B	881	888	anti-parallel
Strand 3	B	982	990	anti-parallel
Strand 4	B	949	960	anti-parallel
Strand 5	B	938	946	anti-parallel
Strand 6	B	894	901	anti-parallel
Strand 7	B	914	921	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	212	217	anti-parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	169	172	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	86	first strand
Strand 2	C	56	63	anti-parallel
Strand 3	C	120	128	anti-parallel
Strand 4	C	181	189	anti-parallel
Strand 5	C	149	154	anti-parallel
Strand 6	C	157	162	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	207	208	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	203	204	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	231	first strand
Strand 2	C	237	246	anti-parallel
Strand 3	C	288	296	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	273	first strand
Strand 2	C	255	262	anti-parallel
Strand 3	C	309	316	anti-parallel
Strand 4	C	322	330	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	342	344	anti-parallel
Strand 3	C	347	348	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	484	485	first strand
Strand 2	C	453	457	parallel
Strand 3	C	408	410	parallel
Strand 4	C	386	389	parallel
Strand 5	C	351	356	parallel
Strand 6	C	562	567	parallel
Strand 7	C	533	534	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	627	632	first strand
Strand 2	C	635	640	anti-parallel
Strand 3	C	677	681	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	661	669	first strand
Strand 2	C	651	658	anti-parallel
Strand 3	C	694	701	anti-parallel
Strand 4	C	714	721	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	739	742	first strand
Strand 2	C	746	751	anti-parallel
Strand 3	C	754	759	anti-parallel
Strand 4	C	765	770	anti-parallel
Strand 5	C	773	774	anti-parallel

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There are 9 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	783	first strand
Strand 2	C	881	888	anti-parallel
Strand 3	C	982	990	anti-parallel
Strand 4	C	949	960	anti-parallel
Strand 5	C	1013	1022	anti-parallel
Strand 6	C	864	872	anti-parallel
Strand 7	C	847	858	anti-parallel
Strand 8	C	834	844	anti-parallel
Strand 9	C	819	829	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	783	first strand
Strand 2	C	881	888	anti-parallel
Strand 3	C	982	990	anti-parallel
Strand 4	C	949	960	anti-parallel
Strand 5	C	938	946	anti-parallel
Strand 6	C	894	901	anti-parallel
Strand 7	C	914	921	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	212	217	anti-parallel
Strand 3	D	138	143	anti-parallel
Strand 4	D	169	172	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	86	first strand
Strand 2	D	56	63	anti-parallel
Strand 3	D	120	128	anti-parallel
Strand 4	D	181	189	anti-parallel
Strand 5	D	149	154	anti-parallel
Strand 6	D	157	162	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	89	first strand
Strand 2	D	207	208	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	203	204	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	231	first strand
Strand 2	D	237	246	anti-parallel
Strand 3	D	288	296	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	273	first strand
Strand 2	D	255	262	anti-parallel
Strand 3	D	309	316	anti-parallel
Strand 4	D	322	330	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	337	first strand
Strand 2	D	342	344	anti-parallel
Strand 3	D	347	348	anti-parallel

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There are 7 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	485	first strand
Strand 2	D	453	457	parallel
Strand 3	D	408	410	parallel
Strand 4	D	386	389	parallel
Strand 5	D	351	356	parallel
Strand 6	D	562	567	parallel
Strand 7	D	533	534	parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	627	632	first strand
Strand 2	D	635	640	anti-parallel
Strand 3	D	677	681	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	661	669	first strand
Strand 2	D	651	658	anti-parallel
Strand 3	D	694	701	anti-parallel
Strand 4	D	714	721	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	739	742	first strand
Strand 2	D	746	751	anti-parallel
Strand 3	D	754	759	anti-parallel
Strand 4	D	765	770	anti-parallel
Strand 5	D	773	774	anti-parallel

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There are 9 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	781	783	first strand
Strand 2	D	881	888	anti-parallel
Strand 3	D	982	990	anti-parallel
Strand 4	D	949	960	anti-parallel
Strand 5	D	1013	1022	anti-parallel
Strand 6	D	864	872	anti-parallel
Strand 7	D	847	858	anti-parallel
Strand 8	D	834	844	anti-parallel
Strand 9	D	819	829	anti-parallel

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There are 7 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	781	783	first strand
Strand 2	D	881	888	anti-parallel
Strand 3	D	982	990	anti-parallel
Strand 4	D	949	960	anti-parallel
Strand 5	D	938	946	anti-parallel
Strand 6	D	894	901	anti-parallel
Strand 7	D	914	921	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 8VT0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VT0