Analysis of interatomic Contacts of Structural Units in PDB entry:
8VT3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VT3 entry

There are 6 chains in PDB entry 8VT3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	GLU 92
B	LEU 19	GLU 92
C	LEU 19	GLU 92
G	PHE 103	GLY 487
H	PHE 103	GLY 487
I	PHE 103	GLY 487

There are 45 helices in PDB entry 8VT3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	81	Right-handed alpha
Helix 2	AA2	A	82	84	Right-handed 310
Helix 3	AA3	B	65	81	Right-handed alpha
Helix 4	AA4	C	54	58	Right-handed 310
Helix 5	AA5	C	65	82	Right-handed alpha
Helix 6	AA6	G	104	109	Right-handed alpha
Helix 7	AA7	G	111	129	Right-handed alpha
Helix 8	AA8	G	130	138	Right-handed alpha
Helix 9	AA9	G	163	172	Right-handed alpha
Helix 10	AB1	G	188	197	Right-handed alpha
Helix 11	AB2	G	199	210	Right-handed alpha
Helix 12	AB3	G	230	234	Right-handed 310
Helix 13	AB4	G	237	246	Right-handed alpha
Helix 14	AB5	G	247	255	Right-handed 310
Helix 15	AB6	G	344	352	Right-handed 310
Helix 16	AB7	G	441	446	Right-handed 310
Helix 17	AB8	G	460	486	Right-handed alpha
Helix 18	AB9	H	104	109	Right-handed alpha
Helix 19	AC1	H	111	129	Right-handed alpha
Helix 20	AC2	H	130	138	Right-handed alpha
Helix 21	AC3	H	163	172	Right-handed alpha
Helix 22	AC4	H	173	176	Right-handed 310
Helix 23	AC5	H	188	197	Right-handed alpha
Helix 24	AC6	H	199	210	Right-handed alpha
Helix 25	AC7	H	223	231	Right-handed alpha
Helix 26	AC8	H	232	234	Right-handed 310
Helix 27	AC9	H	237	247	Right-handed alpha
Helix 28	AD1	H	248	255	Right-handed 310
Helix 29	AD2	H	338	340	Right-handed 310
Helix 30	AD3	H	344	352	Right-handed 310
Helix 31	AD4	H	441	446	Right-handed 310
Helix 32	AD5	H	460	486	Right-handed alpha
Helix 33	AD6	I	104	109	Right-handed alpha
Helix 34	AD7	I	111	129	Right-handed alpha
Helix 35	AD8	I	130	138	Right-handed alpha
Helix 36	AD9	I	163	177	Right-handed alpha
Helix 37	AE1	I	192	197	Right-handed alpha
Helix 38	AE2	I	199	207	Right-handed alpha
Helix 39	AE3	I	230	234	Right-handed 310
Helix 40	AE4	I	237	246	Right-handed alpha
Helix 41	AE5	I	247	255	Right-handed 310
Helix 42	AE6	I	338	340	Right-handed 310
Helix 43	AE7	I	344	349	Right-handed 310
Helix 44	AE8	I	441	445	Right-handed 310
Helix 45	AE9	I	460	486	Right-handed alpha

There are 21 sheets in PDB entry 8VT3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	328	329	first strand
Strand 2	G	332	333	anti-parallel
Strand 3	A	29	39	parallel
Strand 4	G	278	288	anti-parallel
Strand 5	G	309	311	anti-parallel
Strand 6	G	318	320	anti-parallel
Strand 7	G	341	342	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	328	329	first strand
Strand 2	G	332	333	anti-parallel
Strand 3	A	29	39	parallel
Strand 4	A	20	24	anti-parallel
Strand 5	G	434	437	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	150	first strand
Strand 2	G	156	160	anti-parallel
Strand 3	A	44	51	parallel
Strand 4	G	266	273	anti-parallel
Strand 5	G	256	262	anti-parallel
Strand 6	G	213	214	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	328	329	first strand
Strand 2	H	332	336	anti-parallel
Strand 3	B	29	40	parallel
Strand 4	H	278	288	anti-parallel
Strand 5	H	308	311	anti-parallel
Strand 6	H	318	320	anti-parallel
Strand 7	H	341	342	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	328	329	first strand
Strand 2	H	332	336	anti-parallel
Strand 3	B	29	40	parallel
Strand 4	B	20	24	anti-parallel
Strand 5	H	434	437	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	150	first strand
Strand 2	H	156	162	anti-parallel
Strand 3	B	43	51	parallel
Strand 4	H	266	274	anti-parallel
Strand 5	H	256	262	anti-parallel
Strand 6	H	213	214	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	318	320	first strand
Strand 2	I	308	311	anti-parallel
Strand 3	I	276	288	anti-parallel
Strand 4	C	29	40	anti-parallel
Strand 5	I	332	336	parallel
Strand 6	I	328	329	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	318	320	first strand
Strand 2	I	308	311	anti-parallel
Strand 3	I	276	288	anti-parallel
Strand 4	C	29	40	anti-parallel
Strand 5	C	20	24	anti-parallel
Strand 6	I	434	437	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	146	150	first strand
Strand 2	I	156	160	anti-parallel
Strand 3	C	44	51	parallel
Strand 4	I	266	273	anti-parallel
Strand 5	I	256	262	anti-parallel
Strand 6	I	213	214	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	294	295	first strand
Strand 2	G	298	299	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	362	363	first strand
Strand 2	G	458	459	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	372	376	first strand
Strand 2	G	379	384	anti-parallel
Strand 3	G	406	411	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	398	402	first strand
Strand 2	G	390	394	anti-parallel
Strand 3	G	417	420	anti-parallel
Strand 4	G	423	426	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	294	295	first strand
Strand 2	H	298	299	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	303	304	first strand
Strand 2	H	362	364	anti-parallel
Strand 3	H	458	459	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	372	376	first strand
Strand 2	H	379	384	anti-parallel
Strand 3	H	406	411	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	399	401	first strand
Strand 2	H	390	393	anti-parallel
Strand 3	H	417	420	anti-parallel
Strand 4	H	425	426	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	294	295	first strand
Strand 2	I	298	299	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	303	304	first strand
Strand 2	I	362	364	anti-parallel
Strand 3	I	458	459	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	372	376	first strand
Strand 2	I	379	384	anti-parallel
Strand 3	I	406	411	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	399	402	first strand
Strand 2	I	390	393	anti-parallel
Strand 3	I	417	420	anti-parallel
Strand 4	I	425	426	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VT3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VT3