Analysis of interatomic Contacts of Structural Units in PDB entry:
8VT4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VT4 entry

There are 2 chains in PDB entry 8VT4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 1255
B
 MET 1GLU 1255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 8VT4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 8Right-handed alpha
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
30 48Right-handed alpha
Helix 4
AA4
A
49 58Right-handed alpha
Helix 5
AA5
A
68 99Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
108 130Right-handed alpha
Helix 8
AA8
A
137 162Right-handed alpha
Helix 9
AA9
A
171 189Right-handed alpha
Helix 10
AB1
A
208 212Right-handed 310
Helix 11
AB2
A
214 221Right-handed alpha
Helix 12
AB3
A
224 234Right-handed alpha
Helix 13
AB4
A
237 241Right-handed 310
Helix 14
AB5
A
253 268Right-handed alpha
Helix 15
AB6
A
311 322Right-handed alpha
Helix 16
AB7
A
325 329Right-handed 310
Helix 17
AB8
A
333 339Right-handed alpha
Helix 18
AB9
A
342 354Right-handed alpha
Helix 19
AC1
A
361 377Right-handed alpha
Helix 20
AC2
A
380 408Right-handed alpha
Helix 21
AC3
A
424 429Right-handed alpha
Helix 22
AC4
A
430 434Right-handed 310
Helix 23
AC5
A
435 441Right-handed alpha
Helix 24
AC6
A
442 444Right-handed 310
Helix 25
AC7
A
445 462Right-handed alpha
Helix 26
AC8
A
464 475Right-handed alpha
Helix 27
AC9
A
475 489Right-handed alpha
Helix 28
AD1
A
546 571Right-handed alpha
Helix 29
AD2
A
578 599Right-handed alpha
Helix 30
AD3
A
601 621Right-handed alpha
Helix 31
AD4
A
683 691Right-handed alpha
Helix 32
AD5
A
722 728Right-handed alpha
Helix 33
AD6
A
735 745Right-handed alpha
Helix 34
AD7
A
746 753Right-handed alpha
Helix 35
AD8
A
769 785Right-handed alpha
Helix 36
AD9
A
799 810Right-handed alpha
Helix 37
AE1
A
852 859Right-handed alpha
Helix 38
AE2
A
860 872Right-handed alpha
Helix 39
AE3
A
974 1000Right-handed alpha
Helix 40
AE4
A
1014 1041Right-handed alpha
Helix 41
AE5
A
1089 1112Right-handed alpha
Helix 42
AE6
A
1114 1117Right-handed 310
Helix 43
AE7
A
1118 1135Right-handed alpha
Helix 44
AE8
A
1142 1168Right-handed alpha
Helix 45
AE9
A
1172 1183Right-handed alpha
Helix 46
AF1
A
1190 1203Right-handed alpha
Helix 47
AF2
A
1204 1220Right-handed alpha
Helix 48
AF3
A
1226 1239Right-handed alpha
Helix 49
AF4
A
1239 1250Right-handed alpha
Helix 50
AF5
B
2 8Right-handed alpha
Helix 51
AF6
B
30 48Right-handed alpha
Helix 52
AF7
B
49 58Right-handed alpha
Helix 53
AF8
B
68 99Right-handed alpha
Helix 54
AF9
B
103 107Right-handed 310
Helix 55
AG1
B
108 131Right-handed alpha
Helix 56
AG2
B
137 161Right-handed alpha
Helix 57
AG3
B
171 189Right-handed alpha
Helix 58
AG4
B
208 212Right-handed 310
Helix 59
AG5
B
214 221Right-handed alpha
Helix 60
AG6
B
224 234Right-handed alpha
Helix 61
AG7
B
253 268Right-handed alpha
Helix 62
AG8
B
312 321Right-handed alpha
Helix 63
AG9
B
326 338Right-handed alpha
Helix 64
AH1
B
340 354Right-handed alpha
Helix 65
AH2
B
361 377Right-handed alpha
Helix 66
AH3
B
380 405Right-handed alpha
Helix 67
AH4
B
424 429Right-handed alpha
Helix 68
AH5
B
430 434Right-handed 310
Helix 69
AH6
B
435 441Right-handed alpha
Helix 70
AH7
B
442 444Right-handed 310
Helix 71
AH8
B
445 462Right-handed alpha
Helix 72
AH9
B
464 476Right-handed alpha
Helix 73
AI1
B
476 489Right-handed alpha
Helix 74
AI2
B
546 571Right-handed alpha
Helix 75
AI3
B
578 599Right-handed alpha
Helix 76
AI4
B
601 621Right-handed alpha
Helix 77
AI5
B
683 691Right-handed alpha
Helix 78
AI6
B
722 728Right-handed alpha
Helix 79
AI7
B
735 745Right-handed alpha
Helix 80
AI8
B
746 753Right-handed alpha
Helix 81
AI9
B
769 785Right-handed alpha
Helix 82
AJ1
B
799 810Right-handed alpha
Helix 83
AJ2
B
852 859Right-handed alpha
Helix 84
AJ3
B
860 870Right-handed alpha
Helix 85
AJ4
B
974 1000Right-handed alpha
Helix 86
AJ5
B
1013 1041Right-handed alpha
Helix 87
AJ6
B
1089 1112Right-handed alpha
Helix 88
AJ7
B
1114 1117Right-handed 310
Helix 89
AJ8
B
1118 1133Right-handed alpha
Helix 90
AJ9
B
1142 1168Right-handed alpha
Helix 91
AK1
B
1171 1183Right-handed alpha
Helix 92
AK2
B
1184 1186Right-handed 310
Helix 93
AK3
B
1190 1203Right-handed alpha
Helix 94
AK4
B
1204 1220Right-handed alpha
Helix 95
AK5
B
1226 1239Right-handed alpha
Helix 96
AK6
B
1239 1250Right-handed alpha
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There are 7 sheets in PDB entry 8VT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 669first strand
Strand 2
A
642 652anti-parallel
Strand 3
A
696 703anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 710first strand
Strand 2
A
788 790parallel
Strand 3
A
821 825parallel
Strand 4
A
673 677parallel
Strand 5
A
837 842parallel
Strand 6
A
845 851anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 721first strand
Strand 2
A
760 761anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
664 669first strand
Strand 2
B
642 649anti-parallel
Strand 3
B
701 704anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
651 652first strand
Strand 2
B
696 697anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
708 711first strand
Strand 2
B
788 791parallel
Strand 3
B
821 825parallel
Strand 4
B
673 677parallel
Strand 5
B
837 842parallel
Strand 6
B
845 851anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
720 721first strand
Strand 2
B
760 761anti-parallel
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