Analysis of interatomic Contacts of Structural Units in PDB entry:
8VT7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VT7 entry

There are 4 chains in PDB entry 8VT7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	MET 1	ALA 430
J	MET 1	VAL 440
A	MET 1	ALA 430
B	MET 1	VAL 440

There are 83 helices in PDB entry 8VT7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	10	29	Right-handed alpha
Helix 2	AA2	F	41	46	Right-handed alpha
Helix 3	AA3	F	47	49	Right-handed 310
Helix 4	AA4	F	69	78	Right-handed alpha
Helix 5	AA5	F	86	88	Right-handed 310
Helix 6	AA6	F	100	106	Right-handed alpha
Helix 7	AA7	F	107	127	Right-handed alpha
Helix 8	AA8	F	142	159	Right-handed alpha
Helix 9	AA9	F	180	196	Right-handed alpha
Helix 10	AB1	F	204	214	Right-handed alpha
Helix 11	AB2	F	221	242	Right-handed alpha
Helix 12	AB3	F	249	258	Right-handed alpha
Helix 13	AB4	F	275	279	Right-handed 310
Helix 14	AB5	F	285	295	Right-handed alpha
Helix 15	AB6	F	296	299	Right-handed 310
Helix 16	AB7	F	304	308	Right-handed 310
Helix 17	AB8	F	322	337	Right-handed alpha
Helix 18	AB9	F	338	341	Right-handed 310
Helix 19	AC1	F	373	392	Right-handed alpha
Helix 20	AC2	F	394	402	Right-handed alpha
Helix 21	AC3	F	404	428	Right-handed alpha
Helix 22	AC4	J	10	29	Right-handed alpha
Helix 23	AC5	J	47	51	Right-handed 310
Helix 24	AC6	J	72	80	Right-handed alpha
Helix 25	AC7	J	81	86	Right-handed 310
Helix 26	AC8	J	88	90	Right-handed 310
Helix 27	AC9	J	102	108	Right-handed alpha
Helix 28	AD1	J	110	113	Right-handed 310
Helix 29	AD2	J	114	129	Right-handed alpha
Helix 30	AD3	J	143	161	Right-handed alpha
Helix 31	AD4	J	182	195	Right-handed alpha
Helix 32	AD5	J	205	216	Right-handed alpha
Helix 33	AD6	J	223	244	Right-handed alpha
Helix 34	AD7	J	251	259	Right-handed alpha
Helix 35	AD8	J	277	282	Right-handed alpha
Helix 36	AD9	J	287	296	Right-handed alpha
Helix 37	AE1	J	297	301	Right-handed 310
Helix 38	AE2	J	306	310	Right-handed 310
Helix 39	AE3	J	324	338	Right-handed alpha
Helix 40	AE4	J	382	400	Right-handed alpha
Helix 41	AE5	J	404	410	Right-handed alpha
Helix 42	AE6	J	414	437	Right-handed alpha
Helix 43	AE7	A	10	29	Right-handed alpha
Helix 44	AE8	A	41	46	Right-handed alpha
Helix 45	AE9	A	47	49	Right-handed 310
Helix 46	AF1	A	69	78	Right-handed alpha
Helix 47	AF2	A	86	88	Right-handed 310
Helix 48	AF3	A	100	106	Right-handed alpha
Helix 49	AF4	A	107	126	Right-handed alpha
Helix 50	AF5	A	142	159	Right-handed alpha
Helix 51	AF6	A	180	196	Right-handed alpha
Helix 52	AF7	A	203	214	Right-handed alpha
Helix 53	AF8	A	221	242	Right-handed alpha
Helix 54	AF9	A	249	258	Right-handed alpha
Helix 55	AG1	A	275	279	Right-handed 310
Helix 56	AG2	A	285	294	Right-handed alpha
Helix 57	AG3	A	295	299	Right-handed 310
Helix 58	AG4	A	304	308	Right-handed 310
Helix 59	AG5	A	322	337	Right-handed alpha
Helix 60	AG6	A	338	341	Right-handed 310
Helix 61	AG7	A	373	390	Right-handed alpha
Helix 62	AG8	A	395	400	Right-handed alpha
Helix 63	AG9	A	404	428	Right-handed alpha
Helix 64	AH1	B	10	29	Right-handed alpha
Helix 65	AH2	B	47	51	Right-handed 310
Helix 66	AH3	B	72	80	Right-handed alpha
Helix 67	AH4	B	88	90	Right-handed 310
Helix 68	AH5	B	102	108	Right-handed alpha
Helix 69	AH6	B	110	113	Right-handed 310
Helix 70	AH7	B	114	128	Right-handed alpha
Helix 71	AH8	B	143	161	Right-handed alpha
Helix 72	AH9	B	182	195	Right-handed alpha
Helix 73	AI1	B	205	216	Right-handed alpha
Helix 74	AI2	B	223	244	Right-handed alpha
Helix 75	AI3	B	251	260	Right-handed alpha
Helix 76	AI4	B	277	282	Right-handed alpha
Helix 77	AI5	B	287	297	Right-handed alpha
Helix 78	AI6	B	298	301	Right-handed 310
Helix 79	AI7	B	306	310	Right-handed 310
Helix 80	AI8	B	324	338	Right-handed alpha
Helix 81	AI9	B	382	401	Right-handed alpha
Helix 82	AJ1	B	404	410	Right-handed alpha
Helix 83	AJ2	B	414	437	Right-handed alpha

There are 11 sheets in PDB entry 8VT7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	92	first strand
Strand 2	F	63	67	parallel
Strand 3	F	2	9	parallel
Strand 4	F	129	138	parallel
Strand 5	F	163	170	parallel
Strand 6	F	202	203	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	92	first strand
Strand 2	F	63	67	parallel
Strand 3	F	2	9	parallel
Strand 4	F	129	138	parallel
Strand 5	F	163	170	parallel
Strand 6	F	198	200	parallel
Strand 7	F	265	270	parallel
Strand 8	F	364	371	anti-parallel
Strand 9	F	310	318	anti-parallel
Strand 10	F	349	354	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	58	61	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	92	94	first strand
Strand 2	J	65	69	parallel
Strand 3	J	2	9	parallel
Strand 4	J	131	140	parallel
Strand 5	J	165	171	parallel
Strand 6	J	200	204	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	55	first strand
Strand 2	J	61	63	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	351	355	first strand
Strand 2	J	312	321	parallel
Strand 3	J	373	381	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	63	67	parallel
Strand 3	A	2	9	parallel
Strand 4	A	129	138	parallel
Strand 5	A	163	169	parallel
Strand 6	A	198	202	parallel
Strand 7	A	265	270	parallel
Strand 8	A	363	371	anti-parallel
Strand 9	A	310	319	anti-parallel
Strand 10	A	349	354	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	58	61	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	171	parallel
Strand 6	B	200	204	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	63	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	272	first strand
Strand 2	B	373	381	anti-parallel
Strand 3	B	312	321	anti-parallel
Strand 4	B	351	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VT7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VT7