Analysis of interatomic Contacts of Structural Units in PDB entry:
8VTB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VTB entry

There are 4 chains in PDB entry 8VTB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	ALA 415
B	THR 10	ALA 415
C	THR 10	ALA 415
D	THR 10	ALA 415

There are 88 helices in PDB entry 8VTB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	36	Right-handed alpha
Helix 2	AA2	A	37	42	Right-handed 310
Helix 3	AA3	A	43	58	Right-handed alpha
Helix 4	AA4	A	60	64	Right-handed 310
Helix 5	AA5	A	81	87	Right-handed alpha
Helix 6	AA6	A	90	99	Right-handed alpha
Helix 7	AA7	A	101	106	Right-handed alpha
Helix 8	AA8	A	107	112	Right-handed 310
Helix 9	AA9	A	113	126	Right-handed alpha
Helix 10	AB1	A	131	159	Right-handed alpha
Helix 11	AB2	A	165	182	Right-handed alpha
Helix 12	AB3	A	193	224	Right-handed alpha
Helix 13	AB4	A	226	246	Right-handed alpha
Helix 14	AB5	A	249	268	Right-handed alpha
Helix 15	AB6	A	271	276	Right-handed alpha
Helix 16	AB7	A	277	279	Right-handed 310
Helix 17	AB8	A	280	292	Right-handed alpha
Helix 18	AB9	A	299	303	Right-handed 310
Helix 19	AC1	A	306	316	Right-handed alpha
Helix 20	AC2	A	368	373	Right-handed alpha
Helix 21	AC3	A	394	402	Right-handed alpha
Helix 22	AC4	A	404	415	Right-handed alpha
Helix 23	AC5	B	11	36	Right-handed alpha
Helix 24	AC6	B	37	42	Right-handed 310
Helix 25	AC7	B	43	58	Right-handed alpha
Helix 26	AC8	B	60	64	Right-handed 310
Helix 27	AC9	B	81	87	Right-handed alpha
Helix 28	AD1	B	90	99	Right-handed alpha
Helix 29	AD2	B	101	106	Right-handed alpha
Helix 30	AD3	B	107	112	Right-handed 310
Helix 31	AD4	B	113	126	Right-handed alpha
Helix 32	AD5	B	131	159	Right-handed alpha
Helix 33	AD6	B	165	182	Right-handed alpha
Helix 34	AD7	B	193	224	Right-handed alpha
Helix 35	AD8	B	226	246	Right-handed alpha
Helix 36	AD9	B	249	268	Right-handed alpha
Helix 37	AE1	B	271	276	Right-handed alpha
Helix 38	AE2	B	277	279	Right-handed 310
Helix 39	AE3	B	280	292	Right-handed alpha
Helix 40	AE4	B	299	303	Right-handed 310
Helix 41	AE5	B	306	316	Right-handed alpha
Helix 42	AE6	B	368	373	Right-handed alpha
Helix 43	AE7	B	394	402	Right-handed alpha
Helix 44	AE8	B	404	415	Right-handed alpha
Helix 45	AE9	C	11	36	Right-handed alpha
Helix 46	AF1	C	37	42	Right-handed 310
Helix 47	AF2	C	43	58	Right-handed alpha
Helix 48	AF3	C	60	64	Right-handed 310
Helix 49	AF4	C	81	87	Right-handed alpha
Helix 50	AF5	C	90	99	Right-handed alpha
Helix 51	AF6	C	101	106	Right-handed alpha
Helix 52	AF7	C	107	112	Right-handed 310
Helix 53	AF8	C	113	126	Right-handed alpha
Helix 54	AF9	C	131	159	Right-handed alpha
Helix 55	AG1	C	165	182	Right-handed alpha
Helix 56	AG2	C	193	224	Right-handed alpha
Helix 57	AG3	C	226	246	Right-handed alpha
Helix 58	AG4	C	249	268	Right-handed alpha
Helix 59	AG5	C	271	276	Right-handed alpha
Helix 60	AG6	C	277	279	Right-handed 310
Helix 61	AG7	C	280	292	Right-handed alpha
Helix 62	AG8	C	299	303	Right-handed 310
Helix 63	AG9	C	306	316	Right-handed alpha
Helix 64	AH1	C	368	373	Right-handed alpha
Helix 65	AH2	C	394	402	Right-handed alpha
Helix 66	AH3	C	404	415	Right-handed alpha
Helix 67	AH4	D	11	36	Right-handed alpha
Helix 68	AH5	D	37	42	Right-handed 310
Helix 69	AH6	D	43	58	Right-handed alpha
Helix 70	AH7	D	60	64	Right-handed 310
Helix 71	AH8	D	81	87	Right-handed alpha
Helix 72	AH9	D	90	99	Right-handed alpha
Helix 73	AI1	D	101	106	Right-handed alpha
Helix 74	AI2	D	107	112	Right-handed 310
Helix 75	AI3	D	113	126	Right-handed alpha
Helix 76	AI4	D	131	159	Right-handed alpha
Helix 77	AI5	D	165	182	Right-handed alpha
Helix 78	AI6	D	193	224	Right-handed alpha
Helix 79	AI7	D	226	246	Right-handed alpha
Helix 80	AI8	D	249	268	Right-handed alpha
Helix 81	AI9	D	271	276	Right-handed alpha
Helix 82	AJ1	D	277	279	Right-handed 310
Helix 83	AJ2	D	280	292	Right-handed alpha
Helix 84	AJ3	D	299	303	Right-handed 310
Helix 85	AJ4	D	306	316	Right-handed alpha
Helix 86	AJ5	D	368	373	Right-handed alpha
Helix 87	AJ6	D	394	402	Right-handed alpha
Helix 88	AJ7	D	404	415	Right-handed alpha

There are 8 sheets in PDB entry 8VTB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	387	393	anti-parallel
Strand 3	A	337	343	anti-parallel
Strand 4	A	365	366	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	380	383	anti-parallel
Strand 3	A	346	349	anti-parallel
Strand 4	A	356	360	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	387	393	anti-parallel
Strand 3	B	337	343	anti-parallel
Strand 4	B	365	366	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	380	383	anti-parallel
Strand 3	B	346	349	anti-parallel
Strand 4	B	356	360	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	322	first strand
Strand 2	C	387	393	anti-parallel
Strand 3	C	337	343	anti-parallel
Strand 4	C	365	366	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	380	383	anti-parallel
Strand 3	C	346	349	anti-parallel
Strand 4	C	356	360	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	387	393	anti-parallel
Strand 3	D	337	343	anti-parallel
Strand 4	D	365	366	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	380	383	anti-parallel
Strand 3	D	346	349	anti-parallel
Strand 4	D	356	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VTB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VTB