Analysis of interatomic Contacts of Structural Units in PDB entry:
8VTH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VTH entry

There are 2 chains in PDB entry 8VTH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 4	VAL 325
B	TRP 4	VAL 325

There are 20 helices in PDB entry 8VTH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	49	Right-handed 310
Helix 2	AA2	A	90	93	Right-handed 310
Helix 3	AA3	A	141	144	Right-handed 310
Helix 4	AA4	A	162	167	Right-handed alpha
Helix 5	AA5	A	184	188	Right-handed 310
Helix 6	AA6	A	200	205	Right-handed alpha
Helix 7	AA7	A	206	208	Right-handed 310
Helix 8	AA8	A	211	218	Right-handed alpha
Helix 9	AA9	A	227	232	Right-handed 310
Helix 10	AB1	A	235	239	Right-handed 310
Helix 11	AB2	B	45	49	Right-handed 310
Helix 12	AB3	B	90	93	Right-handed 310
Helix 13	AB4	B	141	144	Right-handed 310
Helix 14	AB5	B	162	167	Right-handed alpha
Helix 15	AB6	B	184	188	Right-handed 310
Helix 16	AB7	B	200	205	Right-handed alpha
Helix 17	AB8	B	206	208	Right-handed 310
Helix 18	AB9	B	211	218	Right-handed alpha
Helix 19	AC1	B	227	232	Right-handed 310
Helix 20	AC2	B	235	239	Right-handed 310

There are 16 sheets in PDB entry 8VTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	20	first strand
Strand 2	A	26	37	anti-parallel
Strand 3	A	42	43	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	20	first strand
Strand 2	A	26	37	anti-parallel
Strand 3	A	298	308	anti-parallel
Strand 4	A	286	293	anti-parallel
Strand 5	A	80	84	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	66	68	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	137	139	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	108	115	anti-parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	249	253	anti-parallel
Strand 5	A	261	264	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	126	129	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	157	159	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	284	first strand
Strand 2	A	270	276	anti-parallel
Strand 3	A	316	323	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	20	first strand
Strand 2	B	26	37	anti-parallel
Strand 3	B	42	43	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	20	first strand
Strand 2	B	26	37	anti-parallel
Strand 3	B	298	308	anti-parallel
Strand 4	B	286	293	anti-parallel
Strand 5	B	80	84	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	66	68	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	137	139	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	108	115	anti-parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	249	253	anti-parallel
Strand 5	B	261	264	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	126	129	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	157	159	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	318	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VTH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VTH