Analysis of interatomic Contacts of Structural Units in PDB entry:
8VTI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VTI entry

There are 4 chains in PDB entry 8VTI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 497LEU 854
B
 THR 855GLU 865
C
 ILE 3ILE 107
D
 VAL 5SER 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8VTI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
553 565Right-handed alpha
Helix 2
AA2
A
567 579Right-handed alpha
Helix 3
AA3
A
584 609Right-handed alpha
Helix 4
AA4
A
618 646Right-handed alpha
Helix 5
AA5
A
647 649Right-handed 310
Helix 6
AA6
A
650 657Right-handed alpha
Helix 7
AA7
A
658 683Right-handed alpha
Helix 8
AA8
A
728 735Right-handed alpha
Helix 9
AA9
A
751 755Right-handed 310
Helix 10
AB1
D
64 68Right-handed 310
Helix 11
AB2
D
77 79Right-handed 310
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There are 10 sheets in PDB entry 8VTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
506 507anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 520first strand
Strand 2
A
528 530anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 690first strand
Strand 2
A
697 704anti-parallel
Strand 3
A
741 748anti-parallel
Strand 4
A
781 786anti-parallel
Strand 5
B
856 862anti-parallel
Strand 6
A
775 776anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 690first strand
Strand 2
A
697 704anti-parallel
Strand 3
A
741 748anti-parallel
Strand 4
A
781 786anti-parallel
Strand 5
B
856 862anti-parallel
Strand 6
A
817 824anti-parallel
Strand 7
A
829 833anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 715first strand
Strand 2
A
725 726anti-parallel
Strand 3
A
794 805anti-parallel
Strand 4
A
846 854anti-parallel
Strand 5
A
837 842anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
103 105parallel
Strand 3
C
86 87anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 50anti-parallel
Strand 6
C
54 55anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
103 105parallel
Strand 3
C
86 87anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
90 91anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 22first strand
Strand 2
C
72 76anti-parallel
Strand 3
C
63 67anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 10first strand
Strand 2
D
20 28anti-parallel
Strand 3
D
81 87anti-parallel
Strand 4
D
71 76anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
121 124parallel
Strand 3
D
95 100anti-parallel
Strand 4
D
37 42anti-parallel
Strand 5
D
48 54anti-parallel
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