Analysis of interatomic Contacts of Structural Units in PDB entry:
8VTM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VTM entry

There are 4 chains in PDB entry 8VTM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 11	SER 250
L	ALA 1	GLY 281
M	GLU 2	LEU 209
M	GLY 211	GLY 302

There are 34 helices in PDB entry 8VTM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	11	35	Right-handed alpha
Helix 2	AA2	H	66	70	Right-handed 310
Helix 3	AA3	H	103	108	Right-handed alpha
Helix 4	AA4	H	109	113	Right-handed 310
Helix 5	AA5	H	209	213	Right-handed 310
Helix 6	AA6	H	226	244	Right-handed alpha
Helix 7	AA7	L	31	57	Right-handed alpha
Helix 8	AA8	L	70	74	Right-handed 310
Helix 9	AA9	L	83	112	Right-handed alpha
Helix 10	AB1	L	115	133	Right-handed alpha
Helix 11	AB2	L	133	140	Right-handed alpha
Helix 12	AB3	L	151	163	Right-handed alpha
Helix 13	AB4	L	164	165	Right-handed 310
Helix 14	AB5	L	166	169	Right-handed 310
Helix 15	AB6	L	170	199	Right-handed alpha
Helix 16	AB7	L	208	220	Right-handed alpha
Helix 17	AB8	L	226	250	Right-handed alpha
Helix 18	AB9	L	260	262	Right-handed 310
Helix 19	AC1	L	263	268	Right-handed alpha
Helix 20	AC2	M	36	41	Right-handed alpha
Helix 21	AC3	M	53	78	Right-handed alpha
Helix 22	AC4	M	81	88	Right-handed alpha
Helix 23	AC5	M	108	111	Right-handed 310
Helix 24	AC6	M	112	140	Right-handed alpha
Helix 25	AC7	M	144	162	Right-handed alpha
Helix 26	AC8	M	162	169	Right-handed alpha
Helix 27	AC9	M	178	194	Right-handed alpha
Helix 28	AD1	M	195	198	Right-handed 310
Helix 29	AD2	M	199	226	Right-handed alpha
Helix 30	AD3	M	227	230	Right-handed 310
Helix 31	AD4	M	233	240	Right-handed alpha
Helix 32	AD5	M	242	257	Right-handed alpha
Helix 33	AD6	M	261	290	Right-handed alpha
Helix 34	AD7	M	293	301	Right-handed alpha

There are 7 sheets in PDB entry 8VTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	63	first strand
Strand 2	H	74	75	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	89	first strand
Strand 2	H	98	100	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	162	170	anti-parallel
Strand 3	H	175	183	anti-parallel
Strand 4	H	188	192	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	142	first strand
Strand 2	M	12	13	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	155	first strand
Strand 2	H	203	205	parallel
Strand 3	H	196	198	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	26	first strand
Strand 2	L	29	30	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	66	first strand
Strand 2	L	148	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VTM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VTM