Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VUJ entry

There are 8 chains in PDB entry 8VUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 27	LYS 813
B	LEU 34	PHE 814
C	ILE 26	LYS 813
D	ASN 35	PHE 814
H	LEU 2	VAL 118
I	LEU 231	VAL 347
L	ASN 1	VAL 109
M	ASN 230	VAL 338

There are105 helices in PDB entry 8VUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	71	84	Right-handed alpha
Helix 3	AA3	A	103	114	Right-handed alpha
Helix 4	AA4	A	144	146	Right-handed 310
Helix 5	AA5	A	147	155	Right-handed alpha
Helix 6	AA6	A	170	184	Right-handed alpha
Helix 7	AA7	A	204	213	Right-handed alpha
Helix 8	AA8	A	224	237	Right-handed alpha
Helix 9	AA9	A	276	296	Right-handed alpha
Helix 10	AB1	A	317	327	Right-handed alpha
Helix 11	AB2	A	458	471	Right-handed alpha
Helix 12	AB3	A	500	507	Right-handed alpha
Helix 13	AB4	A	522	526	Right-handed 310
Helix 14	AB5	A	559	582	Right-handed alpha
Helix 15	AB6	A	584	590	Right-handed alpha
Helix 16	AB7	A	592	598	Right-handed alpha
Helix 17	AB8	A	607	639	Right-handed alpha
Helix 18	AB9	A	650	655	Right-handed alpha
Helix 19	AC1	A	668	676	Right-handed alpha
Helix 20	AC2	A	680	689	Right-handed alpha
Helix 21	AC3	A	694	704	Right-handed alpha
Helix 22	AC4	A	713	724	Right-handed alpha
Helix 23	AC5	A	749	760	Right-handed alpha
Helix 24	AC6	A	764	774	Right-handed alpha
Helix 25	AC7	A	781	784	Right-handed 310
Helix 26	AC8	A	785	797	Right-handed alpha
Helix 27	AC9	A	798	813	Right-handed alpha
Helix 28	AD1	B	48	54	Right-handed alpha
Helix 29	AD2	B	78	90	Right-handed alpha
Helix 30	AD3	B	106	119	Right-handed alpha
Helix 31	AD4	B	150	165	Right-handed alpha
Helix 32	AD5	B	179	192	Right-handed alpha
Helix 33	AD6	B	214	220	Right-handed alpha
Helix 34	AD7	B	233	245	Right-handed alpha
Helix 35	AD8	B	287	311	Right-handed alpha
Helix 36	AD9	B	459	472	Right-handed alpha
Helix 37	AE1	B	497	502	Right-handed alpha
Helix 38	AE2	B	517	522	Right-handed alpha
Helix 39	AE3	B	557	578	Right-handed alpha
Helix 40	AE4	B	580	591	Right-handed alpha
Helix 41	AE5	B	604	635	Right-handed alpha
Helix 42	AE6	B	652	656	Right-handed 310
Helix 43	AE7	B	669	678	Right-handed alpha
Helix 44	AE8	B	678	686	Right-handed alpha
Helix 45	AE9	B	692	703	Right-handed alpha
Helix 46	AF1	B	711	721	Right-handed alpha
Helix 47	AF2	B	722	726	Right-handed 310
Helix 48	AF3	B	751	766	Right-handed alpha
Helix 49	AF4	B	767	776	Right-handed alpha
Helix 50	AF5	B	787	789	Right-handed 310
Helix 51	AF6	B	790	814	Right-handed alpha
Helix 52	AF7	C	35	52	Right-handed alpha
Helix 53	AF8	C	70	83	Right-handed alpha
Helix 54	AF9	C	84	86	Right-handed 310
Helix 55	AG1	C	104	112	Right-handed alpha
Helix 56	AG2	C	125	130	Right-handed 310
Helix 57	AG3	C	144	159	Right-handed alpha
Helix 58	AG4	C	170	187	Right-handed alpha
Helix 59	AG5	C	205	213	Right-handed alpha
Helix 60	AG6	C	225	238	Right-handed alpha
Helix 61	AG7	C	250	255	Right-handed 310
Helix 62	AG8	C	256	261	Right-handed alpha
Helix 63	AG9	C	277	297	Right-handed alpha
Helix 64	AH1	C	317	327	Right-handed alpha
Helix 65	AH2	C	458	470	Right-handed alpha
Helix 66	AH3	C	499	504	Right-handed alpha
Helix 67	AH4	C	520	524	Right-handed 310
Helix 68	AH5	C	559	582	Right-handed alpha
Helix 69	AH6	C	584	596	Right-handed alpha
Helix 70	AH7	C	607	639	Right-handed alpha
Helix 71	AH8	C	650	655	Right-handed alpha
Helix 72	AH9	C	669	677	Right-handed alpha
Helix 73	AI1	C	681	688	Right-handed alpha
Helix 74	AI2	C	694	702	Right-handed alpha
Helix 75	AI3	C	714	724	Right-handed alpha
Helix 76	AI4	C	748	763	Right-handed alpha
Helix 77	AI5	C	764	775	Right-handed alpha
Helix 78	AI6	C	781	812	Right-handed alpha
Helix 79	AI7	D	78	91	Right-handed alpha
Helix 80	AI8	D	108	119	Right-handed alpha
Helix 81	AI9	D	128	133	Right-handed 310
Helix 82	AJ1	D	150	165	Right-handed alpha
Helix 83	AJ2	D	179	193	Right-handed alpha
Helix 84	AJ3	D	213	221	Right-handed alpha
Helix 85	AJ4	D	233	247	Right-handed alpha
Helix 86	AJ5	D	258	263	Right-handed alpha
Helix 87	AJ6	D	288	310	Right-handed alpha
Helix 88	AJ7	D	333	338	Right-handed alpha
Helix 89	AJ8	D	443	448	Right-handed 310
Helix 90	AJ9	D	459	472	Right-handed alpha
Helix 91	AK1	D	496	502	Right-handed alpha
Helix 92	AK2	D	556	578	Right-handed alpha
Helix 93	AK3	D	580	594	Right-handed alpha
Helix 94	AK4	D	605	634	Right-handed alpha
Helix 95	AK5	D	647	652	Right-handed alpha
Helix 96	AK6	D	668	678	Right-handed alpha
Helix 97	AK7	D	685	689	Right-handed 310
Helix 98	AK8	D	692	702	Right-handed alpha
Helix 99	AK9	D	713	720	Right-handed alpha
Helix 100	AL1	D	751	765	Right-handed alpha
Helix 101	AL2	D	766	776	Right-handed alpha
Helix 102	AL3	D	786	814	Right-handed alpha
Helix 103	AL4	H	87	91	Right-handed 310
Helix 104	AL5	L	82	86	Right-handed 310
Helix 105	AL6	M	311	315	Right-handed 310

There are 43 sheets in PDB entry 8VUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	30	32	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	246	247	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	346	347	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	361	363	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	372	374	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	477	478	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	452	457	anti-parallel
Strand 3	A	434	437	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	489	first strand
Strand 2	A	496	498	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	712	first strand
Strand 2	A	539	543	anti-parallel
Strand 3	A	727	730	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	69	71	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	144	145	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	204	206	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	276	280	parallel
Strand 3	B	362	365	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	478	479	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	456	457	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	60	61	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	30	32	parallel
Strand 3	C	90	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	138	139	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	165	167	parallel
Strand 3	C	221	222	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	267	268	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	351	355	anti-parallel
Strand 3	C	362	367	anti-parallel
Strand 4	C	373	374	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	477	478	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	453	457	anti-parallel
Strand 3	C	434	436	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	662	663	first strand
Strand 2	C	709	713	parallel
Strand 3	C	535	542	anti-parallel
Strand 4	C	728	738	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	228	first strand
Strand 2	D	255	256	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	280	first strand
Strand 2	D	362	364	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	343	first strand
Strand 2	D	346	347	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	474	475	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	478	479	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	419	first strand
Strand 2	D	453	458	anti-parallel
Strand 3	D	434	437	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	708	710	first strand
Strand 2	D	534	537	anti-parallel
Strand 3	D	728	729	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	78	81	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	50	53	anti-parallel
Strand 3	H	34	36	anti-parallel
Strand 4	H	97	100	anti-parallel
Strand 5	H	106	107	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	40	first strand
Strand 2	H	93	94	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	232	236	first strand
Strand 2	I	250	254	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	245	247	first strand
Strand 2	I	307	315	anti-parallel
Strand 3	I	297	302	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	276	281	first strand
Strand 2	I	264	269	anti-parallel
Strand 3	I	322	326	anti-parallel
Strand 4	I	343	344	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	22	24	anti-parallel
Strand 3	L	73	77	anti-parallel
Strand 4	L	64	67	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	107	108	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	50	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	233	234	first strand
Strand 2	M	246	253	anti-parallel
Strand 3	M	302	308	anti-parallel
Strand 4	M	293	296	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	238	240	first strand
Strand 2	M	334	337	parallel
Strand 3	M	317	323	anti-parallel
Strand 4	M	263	268	anti-parallel
Strand 5	M	274	279	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	238	240	first strand
Strand 2	M	334	337	parallel
Strand 3	M	317	323	anti-parallel
Strand 4	M	328	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUJ