Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VUL entry

There are 4 chains in PDB entry 8VUL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 25GLN 393
B
 LEU 34CYS 399
H
 LEU 2SER 120
L
 ASN 1VAL 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8VUL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 53Right-handed alpha
Helix 2
AA2
A
71 86Right-handed alpha
Helix 3
AA3
A
104 114Right-handed alpha
Helix 4
AA4
A
125 130Right-handed 310
Helix 5
AA5
A
143 146Right-handed 310
Helix 6
AA6
A
147 159Right-handed alpha
Helix 7
AA7
A
170 186Right-handed alpha
Helix 8
AA8
A
204 213Right-handed alpha
Helix 9
AA9
A
224 238Right-handed alpha
Helix 10
AB1
A
256 260Right-handed 310
Helix 11
AB2
A
277 296Right-handed alpha
Helix 12
AB3
A
317 327Right-handed alpha
Helix 13
AB4
B
50 55Right-handed alpha
Helix 14
AB5
B
78 94Right-handed alpha
Helix 15
AB6
B
107 121Right-handed alpha
Helix 16
AB7
B
129 133Right-handed 310
Helix 17
AB8
B
150 165Right-handed alpha
Helix 18
AB9
B
179 193Right-handed alpha
Helix 19
AC1
B
214 221Right-handed alpha
Helix 20
AC2
B
232 247Right-handed alpha
Helix 21
AC3
B
287 310Right-handed alpha
Helix 22
AC4
H
62 68Right-handed 310
Helix 23
AC5
L
82 86Right-handed 310
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There are 12 sheets in PDB entry 8VUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
28 33parallel
Strand 3
A
90 92parallel
Strand 4
A
118 119parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
163 168parallel
Strand 3
A
218 222parallel
Strand 4
A
246 248parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
351 356anti-parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
372 374anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
35 40parallel
Strand 3
B
98 101parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
255 257parallel
Strand 3
B
277 280parallel
Strand 4
B
362 366anti-parallel
Strand 5
B
372 378anti-parallel
Strand 6
B
383 385anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
20 25anti-parallel
Strand 3
H
78 81anti-parallel
Strand 4
H
71 73anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
47 53anti-parallel
Strand 3
H
33 40anti-parallel
Strand 4
H
92 100anti-parallel
Strand 5
H
107 110anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
47 53anti-parallel
Strand 3
H
33 40anti-parallel
Strand 4
H
92 100anti-parallel
Strand 5
H
114 116anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
23 24anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 11first strand
Strand 2
L
107 108parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
46 49first strand
Strand 2
L
34 39anti-parallel
Strand 3
L
88 94anti-parallel
Strand 4
L
99 100anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
63 64first strand
Strand 2
L
77 78anti-parallel
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