Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VUQ entry

There are 4 chains in PDB entry 8VUQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	GLN 393
B	LEU 34	PHE 396
G	GLU 1	VAL 220
I	ASN 1	THR 209

There are 27 helices in PDB entry 8VUQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	71	82	Right-handed alpha
Helix 3	AA3	A	83	86	Right-handed 310
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	105	113	Right-handed alpha
Helix 6	AA6	A	146	158	Right-handed alpha
Helix 7	AA7	A	171	185	Right-handed alpha
Helix 8	AA8	A	186	188	Right-handed 310
Helix 9	AA9	A	204	213	Right-handed alpha
Helix 10	AB1	A	224	238	Right-handed alpha
Helix 11	AB2	A	250	255	Right-handed alpha
Helix 12	AB3	A	276	297	Right-handed alpha
Helix 13	AB4	A	317	328	Right-handed alpha
Helix 14	AB5	B	78	92	Right-handed alpha
Helix 15	AB6	B	107	119	Right-handed alpha
Helix 16	AB7	B	129	133	Right-handed 310
Helix 17	AB8	B	150	166	Right-handed alpha
Helix 18	AB9	B	179	194	Right-handed alpha
Helix 19	AC1	B	212	219	Right-handed alpha
Helix 20	AC2	B	232	246	Right-handed alpha
Helix 21	AC3	B	287	310	Right-handed alpha
Helix 22	AC4	B	335	339	Right-handed 310
Helix 23	AC5	G	165	167	Right-handed 310
Helix 24	AC6	G	196	198	Right-handed 310
Helix 25	AC7	I	28	32	Right-handed 310
Helix 26	AC8	I	121	127	Right-handed alpha
Helix 27	AC9	I	181	188	Right-handed alpha

There are 19 sheets in PDB entry 8VUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	61	62	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	65	66	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	118	119	parallel
Strand 3	A	137	138	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	165	168	parallel
Strand 3	A	220	222	parallel
Strand 4	A	248	249	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	344	346	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	372	373	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	37	39	parallel
Strand 3	B	98	99	parallel
Strand 4	B	124	125	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	169	171	parallel
Strand 3	B	226	227	parallel
Strand 4	B	254	256	parallel
Strand 5	B	276	280	parallel
Strand 6	B	362	364	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	347	348	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	34	38	anti-parallel
Strand 4	G	94	98	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	144	154	anti-parallel
Strand 3	G	185	194	anti-parallel
Strand 4	G	172	174	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	144	154	anti-parallel
Strand 3	G	185	194	anti-parallel
Strand 4	G	178	179	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	163	first strand
Strand 2	G	204	209	anti-parallel
Strand 3	G	217	219	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	101	105	parallel
Strand 3	I	88	92	anti-parallel
Strand 4	I	35	39	anti-parallel
Strand 5	I	46	49	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	20	first strand
Strand 2	I	75	78	anti-parallel
Strand 3	I	63	66	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	118	first strand
Strand 2	I	130	139	anti-parallel
Strand 3	I	172	180	anti-parallel
Strand 4	I	159	161	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	118	first strand
Strand 2	I	130	139	anti-parallel
Strand 3	I	172	180	anti-parallel
Strand 4	I	165	166	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	155	first strand
Strand 2	I	145	149	anti-parallel
Strand 3	I	191	197	anti-parallel
Strand 4	I	200	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VUQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUQ